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MeasurementSet
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IGVFDS2721AQQO
IGVFDS2721AQQO
released
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File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens bone marrow cell (cellular sub pool: SS-PKR 212)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scATAC Lib 625
buenrostro-bernstein:scATAC Lib 625
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0371QDGZ
fastq
reads
R2
175
IGVFFI8765LWAH
IGVFFI9901DVKV
Illumina NovaSeq 6000
10 GB
Jason Buenrostro, Broad
validated
IGVFFI1456HVZR
fastq
reads
R2
174
IGVFFI4808GAIJ
IGVFFI9435UFOD
Illumina NovaSeq 6000
9.1 GB
Jason Buenrostro, Broad
validated
IGVFFI3567OWKU
fastq
reads
R1
175
IGVFFI8765LWAH
IGVFFI9901DVKV
Illumina NovaSeq 6000
6.4 GB
Jason Buenrostro, Broad
validated
IGVFFI8305JJZD
fastq
reads
R1
174
IGVFFI4808GAIJ
IGVFFI9435UFOD
Illumina NovaSeq 6000
5.6 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2223HAHK
PrimaryCell
bone marrow
Homo sapiens bone marrow cell (cellular sub pool: SS-PKR 212)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0609CPVJ
bradley-bernstein:Donor 1992
buenrostro-bernstein:Donor 1992
unspecified
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6911ZLIV
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 174
buenrostro-bernstein:scRNA Lib 174
Jason Buenrostro, Broad