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MeasurementSet
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IGVFDS2689NPPZ
IGVFDS2689NPPZ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP007_G8_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0371IZXG
fastq
reads
I2
2
Illumina NovaSeq X
225LGWLT3
3
403 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2388IYMA
fastq
reads
I1
2
Illumina NovaSeq X
225LGWLT3
4
347 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2745WJYY
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JHVLT3
8
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2980BMLS
fastq
reads
I2
2
Illumina NovaSeq X
225LGWLT3
4
417 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3401PDYP
fastq
reads
I2
1
Illumina NovaSeq X
223JHVLT3
7
367 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4438MTJH
fastq
reads
R1
2
Read 1
Illumina NovaSeq X
225LGWLT3
4
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4442KVOM
fastq
reads
R1
2
Read 1
Illumina NovaSeq X
225LGWLT3
3
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4751LADO
fastq
reads
I2
1
Illumina NovaSeq X
223JHVLT3
8
341 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5133VJZX
fastq
reads
I1
1
Illumina NovaSeq X
223JHVLT3
7
311 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6089OOKQ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JHVLT3
7
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0124BONK
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO8344LUQZ
igvf:corces_donor_BANN0621
male
Homo sapiens
IGVFDO8800RKVB
igvf:corces_donor_BANN1872
female
Homo sapiens
IGVFDO9028PIDF
igvf:corces_donor_BANN1637
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1652TDRC
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP007_G8_ATAC
Ryan Corces, Gladstone Institute UCSF