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INDEXED
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MeasurementSet
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IGVFDS2673QZAP
IGVFDS2673QZAP
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X010_G2_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0408DHRK
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
H5THNDSX5
3
8.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2577MSNI
fastq
reads
I1
1
Illumina NovaSeq 6000
H5THNDSX5
3
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5234BTIB
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
H5THNDSX5
3
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6649WUQD
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
H5THNDSX5
3
8.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM3089OHDA
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO2559GIIZ
igvf:corces_donor_BANN2103
male
Homo sapiens
IGVFDO2801HZMZ
igvf:corces_donor_BANN1028
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO4273OHGB
igvf:corces_donor_BANN0322
female
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5214IKNF
igvf:corces_donor_BANN1070
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7732SCUF
igvf:corces_donor_BANN0351
male
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6589NGAU
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X010_G2_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF