IGVFDS2662CWSH

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus ATAC-seq (10x multiome)

Assay Term

single-nucleus ATAC-seq

Sample Summaries

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X015_G4_ATAC

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI1758PUVH

fastq

reads

Illumina NovaSeq 6000

HTHCCDSX5

1.2 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI3490PRTM

fastq

reads

Illumina NovaSeq 6000

HTHCCDSX5

4.8 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI4483KSIK

fastq

reads

Illumina NovaSeq 6000

HTHCCDSX5

4.8 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI9231XRLL

fastq

reads

Barcode index

Illumina NovaSeq 6000

HTHCCDSX5

2.6 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM1366AGHP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples