{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2636NOED",
"aliases": [
"bradley-bernstein:scATAC Lib 41",
"buenrostro-bernstein:scATAC Lib 41"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8077ATDC](/primary-cells/IGVFSM8077ATDC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8077ATDC/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2636NOED](/measurement-sets/IGVFDS2636NOED/) has sequence file(s): [IGVFFI3152LJJF](/sequence-files/IGVFFI3152LJJF/), [IGVFFI6794XSOX](/sequence-files/IGVFFI6794XSOX/), [IGVFFI0890PVCX](/sequence-files/IGVFFI0890PVCX/), [IGVFFI9876AHYR](/sequence-files/IGVFFI9876AHYR/), [IGVFFI9687EHCD](/sequence-files/IGVFFI9687EHCD/), [IGVFFI8601HBGN](/sequence-files/IGVFFI8601HBGN/), [IGVFFI5484OLNU](/sequence-files/IGVFFI5484OLNU/), [IGVFFI1631KYED](/sequence-files/IGVFFI1631KYED/), [IGVFFI7218AYRN](/sequence-files/IGVFFI7218AYRN/), [IGVFFI9122WYFN](/sequence-files/IGVFFI9122WYFN/), [IGVFFI1648WAMC](/sequence-files/IGVFFI1648WAMC/), [IGVFFI2999CITH](/sequence-files/IGVFFI2999CITH/), [IGVFFI3800EMMD](/sequence-files/IGVFFI3800EMMD/), [IGVFFI9056AVVY](/sequence-files/IGVFFI9056AVVY/), [IGVFFI3103ATIU](/sequence-files/IGVFFI3103ATIU/), [IGVFFI2406BTJV](/sequence-files/IGVFFI2406BTJV/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2636NOED/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2636NOED](/measurement-sets/IGVFDS2636NOED/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2636NOED/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 7",
"buenrostro-bernstein:BioSam 4567_SS-PKR 7"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:41:53.901168+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "186cb778-5060-47f5-b144-ff2e9c310023"
}