IGVFDS2630OWTV

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 5 days (cellular sub pool: SS-PKR 184)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 471

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0755ONMB

fastq

reads

809

IGVFFI9956TMEN

Illumina NovaSeq X

22773CLT3

1.5 GB

Jason Buenrostro, Broad

validated

IGVFFI0980GDJH

fastq

reads

8685

Barcode index

IGVFFI0588DOZA

Illumina NovaSeq X

22LMVNLT4

354 MB

Jason Buenrostro, Broad

validated

IGVFFI1032ARNJ

fastq

reads

8877

IGVFFI1069KYJK

Illumina NovaSeq X

22LMVNLT4

585 MB

Jason Buenrostro, Broad

validated

IGVFFI1395ATWR

fastq

reads

8781

IGVFFI9010RIND

Illumina NovaSeq X

22LMVNLT4

530 MB

Jason Buenrostro, Broad

validated

IGVFFI1731KUBU

fastq

reads

9165

IGVFFI6213JRDX

Illumina NovaSeq X

22LMVNLT4

480 MB

Jason Buenrostro, Broad

validated

IGVFFI1913GNDS

fastq

reads

8685

IGVFFI0588DOZA

Illumina NovaSeq X

22LMVNLT4

537 MB

Jason Buenrostro, Broad

validated

IGVFFI2883XBXX

fastq

reads

8877

Barcode index

IGVFFI1069KYJK

Illumina NovaSeq X

22LMVNLT4

352 MB

Jason Buenrostro, Broad

validated

IGVFFI2930KRVV

fastq

reads

827

IGVFFI8389CEVF

Illumina NovaSeq X

22773CLT3

1.5 GB

Jason Buenrostro, Broad

validated

IGVFFI3370SPWX

fastq

reads

8781

IGVFFI9010RIND

Illumina NovaSeq X

22LMVNLT4

579 MB

Jason Buenrostro, Broad

validated

IGVFFI3386AINJ

fastq

reads

827

Barcode index

IGVFFI8389CEVF

Illumina NovaSeq X

22773CLT3

640 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM8275HXRR

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 5 days (cellular sub pool: SS-PKR 184)