{
"@context": "/terms/",
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"Item"
],
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],
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"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS6876DFJK](/auxiliary-sets/IGVFDS6876DFJK/) has sequence file(s): [IGVFFI4037CSAI](/sequence-files/IGVFFI4037CSAI/), [IGVFFI0060OFIG](/sequence-files/IGVFFI0060OFIG/), [IGVFFI0157FEEA](/sequence-files/IGVFFI0157FEEA/), [IGVFFI6197LEMJ](/sequence-files/IGVFFI6197LEMJ/), [IGVFFI0060MPDD](/sequence-files/IGVFFI0060MPDD/), [IGVFFI8232MDFK](/sequence-files/IGVFFI8232MDFK/), [IGVFFI9889JNNL](/sequence-files/IGVFFI9889JNNL/), [IGVFFI2547BHED](/sequence-files/IGVFFI2547BHED/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS6876DFJK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2610IANK](/measurement-sets/IGVFDS2610IANK/) has sequence file(s): [IGVFFI2926OSLO](/sequence-files/IGVFFI2926OSLO/), [IGVFFI5049IWDT](/sequence-files/IGVFFI5049IWDT/), [IGVFFI5699IPNL](/sequence-files/IGVFFI5699IPNL/), [IGVFFI4669PAEC](/sequence-files/IGVFFI4669PAEC/), [IGVFFI4303LQSC](/sequence-files/IGVFFI4303LQSC/), [IGVFFI6844VZPJ](/sequence-files/IGVFFI6844VZPJ/), [IGVFFI7785ZSYW](/sequence-files/IGVFFI7785ZSYW/), [IGVFFI8595LDID](/sequence-files/IGVFFI8595LDID/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2610IANK/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS2610IANK](/measurement-sets/IGVFDS2610IANK/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS2610IANK/"
}
]
},
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],
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}
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"component": "networks",
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"title": "Harinder Singh"
},
"title": "Linking genome variation to transcriptional network dynamics in human B cells"
},
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],
"sex": "male",
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}
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},
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],
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],
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"aliases": [
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],
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],
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}
],
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"summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 2 more samples",
"taxa": "Homo sapiens",
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}
],
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},
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"summary": "scRNA-seq",
"uuid": "e83e8165-f2b9-4892-852f-d655737d2f79"
}