IGVFDS2582UBJN

1{
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18        "status": "released",
19        "term_name": "single-nucleus ATAC-seq"
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361                "detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [359e56f1-634f-4096-b79c-f872a8108e1c](/phenotypic-features/359e56f1-634f-4096-b79c-f872a8108e1c/).",
362                "level": 30,
363                "level_name": "INTERNAL_ACTION",
364                "name": "audit_item_status",
365                "path": "/human-donors/IGVFDO5194SXHC/"
366            },
367            {
368                "category": "mismatched status",
369                "detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [089d8c0e-3573-4f1a-a25e-68c9e9178176](/phenotypic-features/089d8c0e-3573-4f1a-a25e-68c9e9178176/).",
370                "level": 30,
371                "level_name": "INTERNAL_ACTION",
372                "name": "audit_item_status",
373                "path": "/human-donors/IGVFDO5194SXHC/"
374            },
375            {
376                "category": "mismatched status",
377                "detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [a6b0187e-c51c-447e-866d-b3e071ab31a3](/phenotypic-features/a6b0187e-c51c-447e-866d-b3e071ab31a3/).",
378                "level": 30,
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381                "path": "/human-donors/IGVFDO5194SXHC/"
382            },
383            {
384                "category": "mismatched status",
385                "detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [56bca94c-e5cb-4bd1-b90a-9977dedaa882](/phenotypic-features/56bca94c-e5cb-4bd1-b90a-9977dedaa882/).",
386                "level": 30,
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388                "name": "audit_item_status",
389                "path": "/human-donors/IGVFDO5194SXHC/"
390            },
391            {
392                "category": "mismatched status",
393                "detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [d42b2763-dab2-4434-a2ff-90f908a90db1](/phenotypic-features/d42b2763-dab2-4434-a2ff-90f908a90db1/).",
394                "level": 30,
395                "level_name": "INTERNAL_ACTION",
396                "name": "audit_item_status",
397                "path": "/human-donors/IGVFDO8800RKVB/"
398            },
399            {
400                "category": "mismatched status",
401                "detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [1e6fcee5-5039-4c6f-86fc-6271a4ccbc72](/phenotypic-features/1e6fcee5-5039-4c6f-86fc-6271a4ccbc72/).",
402                "level": 30,
403                "level_name": "INTERNAL_ACTION",
404                "name": "audit_item_status",
405                "path": "/human-donors/IGVFDO8800RKVB/"
406            },
407            {
408                "category": "mismatched status",
409                "detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [4bba57b2-fe4e-46c7-ace5-64469134b74a](/phenotypic-features/4bba57b2-fe4e-46c7-ace5-64469134b74a/).",
410                "level": 30,
411                "level_name": "INTERNAL_ACTION",
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413                "path": "/human-donors/IGVFDO8800RKVB/"
414            },
415            {
416                "category": "mismatched status",
417                "detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [4f2de9a0-55d4-4474-973d-63b58cb1b930](/phenotypic-features/4f2de9a0-55d4-4474-973d-63b58cb1b930/).",
418                "level": 30,
419                "level_name": "INTERNAL_ACTION",
420                "name": "audit_item_status",
421                "path": "/human-donors/IGVFDO8800RKVB/"
422            },
423            {
424                "category": "mismatched status",
425                "detail": "Preview human donor [IGVFDO8800RKVB](/human-donors/IGVFDO8800RKVB/) has in progress subobject phenotypic feature [0ba97096-19d9-4d59-873a-9ca2c42354f0](/phenotypic-features/0ba97096-19d9-4d59-873a-9ca2c42354f0/).",
426                "level": 30,
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428                "name": "audit_item_status",
429                "path": "/human-donors/IGVFDO8800RKVB/"
430            },
431            {
432                "category": "mismatched status",
433                "detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [9109c230-248d-47c3-9cff-73daf2db597a](/phenotypic-features/9109c230-248d-47c3-9cff-73daf2db597a/).",
434                "level": 30,
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436                "name": "audit_item_status",
437                "path": "/human-donors/IGVFDO8458OKEW/"
438            },
439            {
440                "category": "mismatched status",
441                "detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4a89566b-e6ee-4846-b48a-601a52c201ab](/phenotypic-features/4a89566b-e6ee-4846-b48a-601a52c201ab/).",
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446            },
447            {
448                "category": "mismatched status",
449                "detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [3f62e325-e003-4f54-a5ed-1e5ab90bffbb](/phenotypic-features/3f62e325-e003-4f54-a5ed-1e5ab90bffbb/).",
450                "level": 30,
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452                "name": "audit_item_status",
453                "path": "/human-donors/IGVFDO8458OKEW/"
454            },
455            {
456                "category": "mismatched status",
457                "detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [fc1de29e-57a0-4cdb-ac92-597485b27795](/phenotypic-features/fc1de29e-57a0-4cdb-ac92-597485b27795/).",
458                "level": 30,
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460                "name": "audit_item_status",
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462            },
463            {
464                "category": "mismatched status",
465                "detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208](/phenotypic-features/b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208/).",
466                "level": 30,
467                "level_name": "INTERNAL_ACTION",
468                "name": "audit_item_status",
469                "path": "/human-donors/IGVFDO8458OKEW/"
470            },
471            {
472                "category": "mismatched status",
473                "detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb](/phenotypic-features/4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb/).",
474                "level": 30,
475                "level_name": "INTERNAL_ACTION",
476                "name": "audit_item_status",
477                "path": "/human-donors/IGVFDO8458OKEW/"
478            },
479            {
480                "category": "mismatched status",
481                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [8571b362-6133-4f95-8a7d-3f8eadd9f3e7](/phenotypic-features/8571b362-6133-4f95-8a7d-3f8eadd9f3e7/).",
482                "level": 30,
483                "level_name": "INTERNAL_ACTION",
484                "name": "audit_item_status",
485                "path": "/human-donors/IGVFDO5410JIJT/"
486            },
487            {
488                "category": "mismatched status",
489                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [1baae586-6df7-4bd4-b45d-715e7c843036](/phenotypic-features/1baae586-6df7-4bd4-b45d-715e7c843036/).",
490                "level": 30,
491                "level_name": "INTERNAL_ACTION",
492                "name": "audit_item_status",
493                "path": "/human-donors/IGVFDO5410JIJT/"
494            },
495            {
496                "category": "mismatched status",
497                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [3101c455-2038-49a5-9ba3-d6d44b02e1af](/phenotypic-features/3101c455-2038-49a5-9ba3-d6d44b02e1af/).",
498                "level": 30,
499                "level_name": "INTERNAL_ACTION",
500                "name": "audit_item_status",
501                "path": "/human-donors/IGVFDO5410JIJT/"
502            },
503            {
504                "category": "mismatched status",
505                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [0bb4a2a6-714d-4f1b-b1ca-f553eaddf065](/phenotypic-features/0bb4a2a6-714d-4f1b-b1ca-f553eaddf065/).",
506                "level": 30,
507                "level_name": "INTERNAL_ACTION",
508                "name": "audit_item_status",
509                "path": "/human-donors/IGVFDO5410JIJT/"
510            },
511            {
512                "category": "mismatched status",
513                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [f302fb2e-c140-4148-a63f-4995c94219cd](/phenotypic-features/f302fb2e-c140-4148-a63f-4995c94219cd/).",
514                "level": 30,
515                "level_name": "INTERNAL_ACTION",
516                "name": "audit_item_status",
517                "path": "/human-donors/IGVFDO5410JIJT/"
518            },
519            {
520                "category": "mismatched status",
521                "detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [a641a480-5815-4668-9082-c3eea81343dd](/phenotypic-features/a641a480-5815-4668-9082-c3eea81343dd/).",
522                "level": 30,
523                "level_name": "INTERNAL_ACTION",
524                "name": "audit_item_status",
525                "path": "/human-donors/IGVFDO5410JIJT/"
526            }
527        ],
528        "NOT_COMPLIANT": [
529            {
530                "category": "missing sequence specification",
531                "detail": "Measurement set [IGVFDS2582UBJN](/measurement-sets/IGVFDS2582UBJN/) has sequence file(s): [IGVFFI7691SJPJ](/sequence-files/IGVFFI7691SJPJ/), [IGVFFI5265LSLV](/sequence-files/IGVFFI5265LSLV/), [IGVFFI1600DQEM](/sequence-files/IGVFFI1600DQEM/), [IGVFFI3164PWOQ](/sequence-files/IGVFFI3164PWOQ/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
532                "level": 50,
533                "level_name": "NOT_COMPLIANT",
534                "name": "audit_missing_seqspec",
535                "path": "/measurement-sets/IGVFDS2582UBJN/"
536            },
537            {
538                "category": "missing strand specificity",
539                "detail": "Measurement set [IGVFDS2582UBJN](/measurement-sets/IGVFDS2582UBJN/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
540                "level": 50,
541                "level_name": "NOT_COMPLIANT",
542                "name": "audit_missing_strand_specificity",
543                "path": "/measurement-sets/IGVFDS2582UBJN/"
544            }
545        ],
546        "WARNING": [
547            {
548                "category": "missing analysis",
549                "detail": "Measurement set [IGVFDS2582UBJN](/measurement-sets/IGVFDS2582UBJN/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
550                "level": 40,
551                "level_name": "WARNING",
552                "name": "audit_input_for",
553                "path": "/measurement-sets/IGVFDS2582UBJN/"
554            }
555        ]
556    },
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560        "contact_pi": {
561            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
562            "title": "Ansuman Satpathy"
563        },
564        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
565    },
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567    "controlled_access": false,
568    "creation_timestamp": "2025-03-19T19:45:05.814711+00:00",
569    "data_use_limitation_summaries": [
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571    ],
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578            ],
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592        },
593        {
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792    "onlist_files": [
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794    ],
795    "onlist_method": "no combination",
796    "preferred_assay_title": "10x multiome",
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798        "https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
799    ],
800    "related_multiome_datasets": [
801        {
802            "@id": "/measurement-sets/IGVFDS6766ZMIC/",
803            "accession": "IGVFDS6766ZMIC",
804            "status": "preview"
805        }
806    ],
807    "samples": [
808        {
809            "@id": "/multiplexed-samples/IGVFSM2874KTFO/",
810            "@type": [
811                "MultiplexedSample",
812                "Sample",
813                "Item"
814            ],
815            "accession": "IGVFSM2874KTFO",
816            "aliases": [
817                "igvf:corces_multiplexedSample_X037_G7"
818            ],
819            "classifications": [
820                "tissue",
821                "multiplexed sample"
822            ],
823            "disease_terms": [
824                {
825                    "@id": "/phenotype-terms/DOID_0080832/",
826                    "status": "in progress",
827                    "term_name": "mild cognitive impairment"
828                },
829                {
830                    "@id": "/phenotype-terms/DOID_14330/",
831                    "status": "in progress",
832                    "term_name": "Parkinson's disease"
833                },
834                {
835                    "@id": "/phenotype-terms/DOID_9246/",
836                    "status": "in progress",
837                    "term_name": "cerebral amyloid angiopathy"
838                }
839            ],
840            "institutional_certificates": [
841                {
842                    "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
843                    "certificate_identifier": "IP115-05",
844                    "controlled_access": false,
845                    "status": "in progress"
846                }
847            ],
848            "modifications": [],
849            "sample_terms": [
850                {
851                    "@id": "/sample-terms/UBERON_0001874/",
852                    "@type": [
853                        "SampleTerm",
854                        "OntologyTerm",
855                        "Item"
856                    ],
857                    "status": "preview",
858                    "summary": "putamen",
859                    "term_name": "putamen"
860                },
861                {
862                    "@id": "/sample-terms/UBERON_0002038/",
863                    "@type": [
864                        "SampleTerm",
865                        "OntologyTerm",
866                        "Item"
867                    ],
868                    "status": "preview",
869                    "summary": "substantia nigra",
870                    "term_name": "substantia nigra"
871                },
872                {
873                    "@id": "/sample-terms/UBERON_0002129/",
874                    "@type": [
875                        "SampleTerm",
876                        "OntologyTerm",
877                        "Item"
878                    ],
879                    "status": "preview",
880                    "summary": "cerebellar cortex",
881                    "term_name": "cerebellar cortex"
882                },
883                {
884                    "@id": "/sample-terms/UBERON_0002740/",
885                    "@type": [
886                        "SampleTerm",
887                        "OntologyTerm",
888                        "Item"
889                    ],
890                    "status": "preview",
891                    "summary": "posterior cingulate gyrus",
892                    "term_name": "posterior cingulate gyrus"
893                },
894                {
895                    "@id": "/sample-terms/UBERON_0002771/",
896                    "@type": [
897                        "SampleTerm",
898                        "OntologyTerm",
899                        "Item"
900                    ],
901                    "status": "preview",
902                    "summary": "middle temporal gyrus",
903                    "term_name": "middle temporal gyrus"
904                }
905            ],
906            "status": "preview",
907            "summary": "multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples",
908            "taxa": "Homo sapiens",
909            "treatments": []
910        }
911    ],
912    "schema_version": "26",
913    "status": "preview",
914    "submitted_by": {
915        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
916        "title": "Ryan Corces"
917    },
918    "submitted_files_timestamp": "2025-03-20T02:57:35.698780+00:00",
919    "summary": "single-nucleus ATAC-seq (10x multiome)",
920    "uuid": "9f12589d-6dcb-44fe-ae1f-063349f0d797"
921}