Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS2556FUQS
IGVFDS2556FUQS
released
Json view
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
Mus musculus CAST/EiJ (female, 10 weeks) left cerebral cortex tissue
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-atac-se-ewov1nm2kgr2/v1
Aliases
ansuman-satpathy:snATAC-seq_mouse_bridge_104
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0995JOSZ
fastq
reads
R2
1
Barcode index
IGVFFI3171JACA
Illumina NovaSeq 6000
HV7LKDSX5
1
9.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2852IKKO
fastq
reads
R3
1
Read 2
IGVFFI3171JACA
Illumina NovaSeq 6000
HV7LKDSX5
1
28 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6612BHWY
fastq
reads
I1
1
IGVFFI3171JACA
Illumina NovaSeq 6000
HV7LKDSX5
1
3.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7580CYCQ
fastq
reads
R1
1
Read 1
IGVFFI3171JACA
Illumina NovaSeq 6000
HV7LKDSX5
1
28 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8448JQZQ
Tissue
left cerebral cortex
Mus musculus CAST/EiJ (female, 10 weeks) left cerebral cortex tissue
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0010EPVZ
ansuman-satpathy:104_CASTJ_10F
female
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4471CCED
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
ansuman-satpathy:snRNA-seq_mouse_bridge_104
Ansuman Satpathy, Stanford