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INDEXED
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MeasurementSet
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IGVFDS2552IDIF
IGVFDS2552IDIF
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast cell line, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C39_day0
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0079LYEU
fastq
reads
R2
2
Illumina NovaSeq X
2
4.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI0962XFRW
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
4
4.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1687BNXU
fastq
reads
R2
2
Illumina NovaSeq X
3
4.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI4333OREW
fastq
reads
R1
1
Illumina NovaSeq X
3
4.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI4727BUFP
fastq
reads
R1
1
Illumina NovaSeq X
1
4.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5679QDIP
fastq
reads
R1
1
Illumina NovaSeq X
2
4.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI6200ISZZ
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
1
4.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI8459GMRA
fastq
reads
R1
1
Illumina NovaSeq X
4
4.7 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8158AYJT
InVitroSystem
fibroblast
fibroblast cell line, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA