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INDEXED
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MeasurementSet
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IGVFDS2479YVKW
IGVFDS2479YVKW
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP026_G7_ATAC
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1108PSQB
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19NHCA4LE
4
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1132BUHH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19NHCA4LE
4
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1864NXNC
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19NHCA4LE
5
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3487WMJP
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19NHCA4LE
5
3.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3598HDLU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19NHCA4LE
5
14 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4728MPYI
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19NHCA4LE
4
3.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4829BEXQ
fastq
reads
I1
1
Illumina NovaSeq X
19NHCA4LE
5
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5054VRMS
fastq
reads
I1
1
Illumina NovaSeq X
19NHCA4LE
4
1.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6899HSQU
MultiplexedSample
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO4053HEKW
igvf:corces_donor_BANN1317
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO5718REZU
igvf:corces_donor_BANN9926
female
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5365DMUS
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP026_G7_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF