{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2476NYCP",
"aliases": [
"bradley-bernstein:scRNA Lib 21",
"buenrostro-bernstein:scRNA Lib 21"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM4241TGLB](/primary-cells/IGVFSM4241TGLB/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM4241TGLB/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2476NYCP](/measurement-sets/IGVFDS2476NYCP/) has sequence file(s): [IGVFFI5494LBCC](/sequence-files/IGVFFI5494LBCC/), [IGVFFI8215JEDO](/sequence-files/IGVFFI8215JEDO/), [IGVFFI1850ZTIO](/sequence-files/IGVFFI1850ZTIO/), [IGVFFI1993PKDJ](/sequence-files/IGVFFI1993PKDJ/), [IGVFFI1544XHKO](/sequence-files/IGVFFI1544XHKO/), [IGVFFI2635YFUW](/sequence-files/IGVFFI2635YFUW/), [IGVFFI7734KISA](/sequence-files/IGVFFI7734KISA/), [IGVFFI6052JCXT](/sequence-files/IGVFFI6052JCXT/), [IGVFFI3327LJSO](/sequence-files/IGVFFI3327LJSO/), [IGVFFI1900UXMM](/sequence-files/IGVFFI1900UXMM/), [IGVFFI2550QJLR](/sequence-files/IGVFFI2550QJLR/), [IGVFFI0646AZOT](/sequence-files/IGVFFI0646AZOT/), [IGVFFI3534DAFZ](/sequence-files/IGVFFI3534DAFZ/), [IGVFFI3472TRYR](/sequence-files/IGVFFI3472TRYR/), [IGVFFI5405OSPN](/sequence-files/IGVFFI5405OSPN/), [IGVFFI8412YJVY](/sequence-files/IGVFFI8412YJVY/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2476NYCP/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2476NYCP](/measurement-sets/IGVFDS2476NYCP/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2476NYCP/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
],
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"submitted_files_timestamp": "2024-02-12T21:30:40.121100+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
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}