IGVFDS2448KDEL

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus RNA sequencing assay (10x multiome)

Assay Term

single-nucleus RNA sequencing assay

Sample Summaries

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X039_G2_RNA

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI2438XFNA

fastq

reads

Illumina NovaSeq 6000

H5VM5DSX7

10 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI4125WOZI

fastq

reads

Illumina NovaSeq 6000

H5VM5DSX7

4.4 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI4624RCTM

fastq

reads

Illumina NovaSeq 6000

H5VM5DSX7

1.5 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI8434ZFZI

fastq

reads

Illumina NovaSeq 6000

H5VM5DSX7

1.3 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM9156NSGE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 82 years) substantia nigra tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples