{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2439BCVO/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2439BCVO",
"aliases": [
"bradley-bernstein:scRNA Lib 22",
"buenrostro-bernstein:scRNA Lib 22"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8274BGKK](/primary-cells/IGVFSM8274BGKK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8274BGKK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2439BCVO](/measurement-sets/IGVFDS2439BCVO/) has sequence file(s): [IGVFFI7240STFX](/sequence-files/IGVFFI7240STFX/), [IGVFFI0113GBPI](/sequence-files/IGVFFI0113GBPI/), [IGVFFI7227SLNM](/sequence-files/IGVFFI7227SLNM/), [IGVFFI9882ZJHE](/sequence-files/IGVFFI9882ZJHE/), [IGVFFI0743TVVY](/sequence-files/IGVFFI0743TVVY/), [IGVFFI3913QTXK](/sequence-files/IGVFFI3913QTXK/), [IGVFFI4528OPYX](/sequence-files/IGVFFI4528OPYX/), [IGVFFI4323DEVQ](/sequence-files/IGVFFI4323DEVQ/), [IGVFFI5372XUWZ](/sequence-files/IGVFFI5372XUWZ/), [IGVFFI7994CPGF](/sequence-files/IGVFFI7994CPGF/), [IGVFFI6932KYFZ](/sequence-files/IGVFFI6932KYFZ/), [IGVFFI7754TSVC](/sequence-files/IGVFFI7754TSVC/), [IGVFFI3233UYSO](/sequence-files/IGVFFI3233UYSO/), [IGVFFI5656SHUM](/sequence-files/IGVFFI5656SHUM/), [IGVFFI8139LUCB](/sequence-files/IGVFFI8139LUCB/), [IGVFFI5853DWBK](/sequence-files/IGVFFI5853DWBK/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2439BCVO/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2439BCVO](/measurement-sets/IGVFDS2439BCVO/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2439BCVO/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
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],
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}
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"accession": "IGVFSM8274BGKK",
"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 4",
"buenrostro-bernstein:BioSam 4566_SS-PKR 4"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:01.113156+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "5656e9e2-7535-4b9f-b059-8e446a3fef6a"
}