IGVFDS2422JHIN

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
Sample Summaries
  • multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf3_10x2

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
I1
1
222YV7LT3
1
1.5 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
222YV7LT3
2
6.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
222YV7LT3
2
6.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
222YV7LT3
2
1.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
222YV7LT3
1
3.7 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
222YV7LT3
1
6.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
222YV7LT3
1
6.6 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
222YV7LT3
2
3.7 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Donors

3 items
Aliases
  • igvf:donor_of_WTC11
male
Homo sapiens
  • igvf:donor_of_H9
female
Homo sapiens
  • igvf:donor_of_HepG2
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf3_analysis_set
Ansuman Satpathy, Stanford
1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf3_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf3_10x2
Ansuman Satpathy, Stanford

Attribution

Award
Principal Investigator(s)
Contact P.I.
Lab