{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2419JBTK/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2419JBTK",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep1-FFRep1-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM9146UAUA](/in-vitro-systems/IGVFSM9146UAUA/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9146UAUA/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM9146UAUA](/in-vitro-systems/IGVFSM9146UAUA/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM9146UAUA/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS2419JBTK](/measurement-sets/IGVFDS2419JBTK/) has sequence file(s) [IGVFFI4828TWLG](/sequence-files/IGVFFI4828TWLG/), [IGVFFI2958PFGY](/sequence-files/IGVFFI2958PFGY/), [IGVFFI0589RFKU](/sequence-files/IGVFFI0589RFKU/), [IGVFFI7623KAXD](/sequence-files/IGVFFI7623KAXD/), [IGVFFI3252VOAF](/sequence-files/IGVFFI3252VOAF/), [IGVFFI1679WQWN](/sequence-files/IGVFFI1679WQWN/), [IGVFFI7348VMAZ](/sequence-files/IGVFFI7348VMAZ/), [IGVFFI5245FEPZ](/sequence-files/IGVFFI5245FEPZ/), [IGVFFI7074LOBP](/sequence-files/IGVFFI7074LOBP/), [IGVFFI1902XNUR](/sequence-files/IGVFFI1902XNUR/), [IGVFFI8204WUVE](/sequence-files/IGVFFI8204WUVE/), [IGVFFI0154FYJJ](/sequence-files/IGVFFI0154FYJJ/), [IGVFFI1310CVLX](/sequence-files/IGVFFI1310CVLX/), [IGVFFI1947PLGE](/sequence-files/IGVFFI1947PLGE/), [IGVFFI3510VYRQ](/sequence-files/IGVFFI3510VYRQ/), [IGVFFI3007MGEM](/sequence-files/IGVFFI3007MGEM/), [IGVFFI3813NYPS](/sequence-files/IGVFFI3813NYPS/), [IGVFFI2223IITD](/sequence-files/IGVFFI2223IITD/), [IGVFFI8181FQII](/sequence-files/IGVFFI8181FQII/), [IGVFFI3464LHIC](/sequence-files/IGVFFI3464LHIC/), [IGVFFI6638DLXE](/sequence-files/IGVFFI6638DLXE/), [IGVFFI1833IQXP](/sequence-files/IGVFFI1833IQXP/), [IGVFFI9701DVFW](/sequence-files/IGVFFI9701DVFW/), [IGVFFI0069QXTS](/sequence-files/IGVFFI0069QXTS/), [IGVFFI4071NQGH](/sequence-files/IGVFFI4071NQGH/), [IGVFFI7132KPER](/sequence-files/IGVFFI7132KPER/), [IGVFFI7437NLDF](/sequence-files/IGVFFI7437NLDF/), [IGVFFI0283MNBL](/sequence-files/IGVFFI0283MNBL/), [IGVFFI2570XZTL](/sequence-files/IGVFFI2570XZTL/), [IGVFFI7091RIPS](/sequence-files/IGVFFI7091RIPS/), [IGVFFI1130AYLL](/sequence-files/IGVFFI1130AYLL/), [IGVFFI4278BVHK](/sequence-files/IGVFFI4278BVHK/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS2419JBTK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2419JBTK](/measurement-sets/IGVFDS2419JBTK/) has sequence file(s): [IGVFFI4828TWLG](/sequence-files/IGVFFI4828TWLG/), [IGVFFI2958PFGY](/sequence-files/IGVFFI2958PFGY/), [IGVFFI0589RFKU](/sequence-files/IGVFFI0589RFKU/), [IGVFFI7623KAXD](/sequence-files/IGVFFI7623KAXD/), [IGVFFI3252VOAF](/sequence-files/IGVFFI3252VOAF/), [IGVFFI1679WQWN](/sequence-files/IGVFFI1679WQWN/), [IGVFFI7348VMAZ](/sequence-files/IGVFFI7348VMAZ/), [IGVFFI5245FEPZ](/sequence-files/IGVFFI5245FEPZ/), [IGVFFI7074LOBP](/sequence-files/IGVFFI7074LOBP/), [IGVFFI1902XNUR](/sequence-files/IGVFFI1902XNUR/), [IGVFFI8204WUVE](/sequence-files/IGVFFI8204WUVE/), [IGVFFI0154FYJJ](/sequence-files/IGVFFI0154FYJJ/), [IGVFFI1310CVLX](/sequence-files/IGVFFI1310CVLX/), [IGVFFI1947PLGE](/sequence-files/IGVFFI1947PLGE/), [IGVFFI3510VYRQ](/sequence-files/IGVFFI3510VYRQ/), [IGVFFI3007MGEM](/sequence-files/IGVFFI3007MGEM/), [IGVFFI3813NYPS](/sequence-files/IGVFFI3813NYPS/), [IGVFFI2223IITD](/sequence-files/IGVFFI2223IITD/), [IGVFFI8181FQII](/sequence-files/IGVFFI8181FQII/), [IGVFFI3464LHIC](/sequence-files/IGVFFI3464LHIC/), [IGVFFI6638DLXE](/sequence-files/IGVFFI6638DLXE/), [IGVFFI1833IQXP](/sequence-files/IGVFFI1833IQXP/), [IGVFFI9701DVFW](/sequence-files/IGVFFI9701DVFW/), [IGVFFI0069QXTS](/sequence-files/IGVFFI0069QXTS/), [IGVFFI4071NQGH](/sequence-files/IGVFFI4071NQGH/), [IGVFFI7132KPER](/sequence-files/IGVFFI7132KPER/), [IGVFFI7437NLDF](/sequence-files/IGVFFI7437NLDF/), [IGVFFI0283MNBL](/sequence-files/IGVFFI0283MNBL/), [IGVFFI2570XZTL](/sequence-files/IGVFFI2570XZTL/), [IGVFFI7091RIPS](/sequence-files/IGVFFI7091RIPS/), [IGVFFI1130AYLL](/sequence-files/IGVFFI1130AYLL/), [IGVFFI4278BVHK](/sequence-files/IGVFFI4278BVHK/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2419JBTK/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS2419JBTK](/measurement-sets/IGVFDS2419JBTK/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS2419JBTK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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}
],
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{
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"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-22T02:18:10.834435+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "415d884b-e645-4b93-8626-7184722b0072"
}