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INDEXED
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MeasurementSet
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IGVFDS2419ECQE
IGVFDS2419ECQE
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP001_G2_ATAC
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1232WYIR
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
5
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1497SVRP
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
7
495 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1740ZJDJ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1787KZBR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2009QVRE
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
8
471 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3299BGMI
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
5
512 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4116JQLH
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
8
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5589DISO
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
5
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6145ESAS
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
6
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6399OFTK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
6
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7915KUKE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO1302YEPX
igvf:corces_donor_BANN0215
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4024PLUG
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP001_G2_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF