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INDEXED
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MeasurementSet
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IGVFDS2414ATDI
IGVFDS2414ATDI
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X025_G5_ATAC
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI6252TKHM
fastq
reads
R2
1
Barcode index
Illumina NovaSeq 6000
HV7TNDSX5
3
3.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7238XJSA
fastq
reads
R3
1
Read 2
Illumina NovaSeq 6000
HV7TNDSX5
3
6.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7620NOBH
fastq
reads
R1
1
Read 1
Illumina NovaSeq 6000
HV7TNDSX5
3
5.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7785EQQW
fastq
reads
I1
1
Illumina NovaSeq 6000
HV7TNDSX5
3
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7611BPOR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 87 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0411QFOF
igvf:corces_donor_BANN1750
male
Homo sapiens
IGVFDO0773NPOH
igvf:corces_donor_BANN0560
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO1052TZWO
igvf:corces_donor_BANN1851
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO7606UOXI
igvf:corces_donor_BANN1570
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7951HUGR
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X025_G5_RNA
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF