{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2408JJSR/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2408JJSR",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep1-FFRep2-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM7352WPEI](/in-vitro-systems/IGVFSM7352WPEI/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7352WPEI/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM7352WPEI](/in-vitro-systems/IGVFSM7352WPEI/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM7352WPEI/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS2408JJSR](/measurement-sets/IGVFDS2408JJSR/) has sequence file(s) [IGVFFI9077WPOS](/sequence-files/IGVFFI9077WPOS/), [IGVFFI4302VEKL](/sequence-files/IGVFFI4302VEKL/), [IGVFFI2917ZNGJ](/sequence-files/IGVFFI2917ZNGJ/), [IGVFFI4502BFMI](/sequence-files/IGVFFI4502BFMI/), [IGVFFI4508DIPO](/sequence-files/IGVFFI4508DIPO/), [IGVFFI1847PPED](/sequence-files/IGVFFI1847PPED/), [IGVFFI3421MZSL](/sequence-files/IGVFFI3421MZSL/), [IGVFFI5855IABX](/sequence-files/IGVFFI5855IABX/), [IGVFFI0262QWKE](/sequence-files/IGVFFI0262QWKE/), [IGVFFI4394CMYG](/sequence-files/IGVFFI4394CMYG/), [IGVFFI5849NFJR](/sequence-files/IGVFFI5849NFJR/), [IGVFFI6391DPNG](/sequence-files/IGVFFI6391DPNG/), [IGVFFI8266UMNF](/sequence-files/IGVFFI8266UMNF/), [IGVFFI4203TDPR](/sequence-files/IGVFFI4203TDPR/), [IGVFFI7226GFNQ](/sequence-files/IGVFFI7226GFNQ/), [IGVFFI8698MDJX](/sequence-files/IGVFFI8698MDJX/), [IGVFFI2701ZGIQ](/sequence-files/IGVFFI2701ZGIQ/), [IGVFFI7482BEAW](/sequence-files/IGVFFI7482BEAW/), [IGVFFI8840HOED](/sequence-files/IGVFFI8840HOED/), [IGVFFI4319FJLW](/sequence-files/IGVFFI4319FJLW/), [IGVFFI4993MNWD](/sequence-files/IGVFFI4993MNWD/), [IGVFFI2097EXRE](/sequence-files/IGVFFI2097EXRE/), [IGVFFI5273NUWG](/sequence-files/IGVFFI5273NUWG/), [IGVFFI8168GBMR](/sequence-files/IGVFFI8168GBMR/), [IGVFFI0220FXEN](/sequence-files/IGVFFI0220FXEN/), [IGVFFI1814WWXW](/sequence-files/IGVFFI1814WWXW/), [IGVFFI2845WUPP](/sequence-files/IGVFFI2845WUPP/), [IGVFFI4704VLBI](/sequence-files/IGVFFI4704VLBI/), [IGVFFI1067ZSDR](/sequence-files/IGVFFI1067ZSDR/), [IGVFFI4874MIQN](/sequence-files/IGVFFI4874MIQN/), [IGVFFI7649LTWL](/sequence-files/IGVFFI7649LTWL/), [IGVFFI2183ONZB](/sequence-files/IGVFFI2183ONZB/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS2408JJSR/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2408JJSR](/measurement-sets/IGVFDS2408JJSR/) has sequence file(s): [IGVFFI9077WPOS](/sequence-files/IGVFFI9077WPOS/), [IGVFFI4302VEKL](/sequence-files/IGVFFI4302VEKL/), [IGVFFI2917ZNGJ](/sequence-files/IGVFFI2917ZNGJ/), [IGVFFI4502BFMI](/sequence-files/IGVFFI4502BFMI/), [IGVFFI4508DIPO](/sequence-files/IGVFFI4508DIPO/), [IGVFFI1847PPED](/sequence-files/IGVFFI1847PPED/), [IGVFFI3421MZSL](/sequence-files/IGVFFI3421MZSL/), [IGVFFI5855IABX](/sequence-files/IGVFFI5855IABX/), [IGVFFI0262QWKE](/sequence-files/IGVFFI0262QWKE/), [IGVFFI4394CMYG](/sequence-files/IGVFFI4394CMYG/), [IGVFFI5849NFJR](/sequence-files/IGVFFI5849NFJR/), [IGVFFI6391DPNG](/sequence-files/IGVFFI6391DPNG/), [IGVFFI8266UMNF](/sequence-files/IGVFFI8266UMNF/), [IGVFFI4203TDPR](/sequence-files/IGVFFI4203TDPR/), [IGVFFI7226GFNQ](/sequence-files/IGVFFI7226GFNQ/), [IGVFFI8698MDJX](/sequence-files/IGVFFI8698MDJX/), [IGVFFI2701ZGIQ](/sequence-files/IGVFFI2701ZGIQ/), [IGVFFI7482BEAW](/sequence-files/IGVFFI7482BEAW/), [IGVFFI8840HOED](/sequence-files/IGVFFI8840HOED/), [IGVFFI4319FJLW](/sequence-files/IGVFFI4319FJLW/), [IGVFFI4993MNWD](/sequence-files/IGVFFI4993MNWD/), [IGVFFI2097EXRE](/sequence-files/IGVFFI2097EXRE/), [IGVFFI5273NUWG](/sequence-files/IGVFFI5273NUWG/), [IGVFFI8168GBMR](/sequence-files/IGVFFI8168GBMR/), [IGVFFI0220FXEN](/sequence-files/IGVFFI0220FXEN/), [IGVFFI1814WWXW](/sequence-files/IGVFFI1814WWXW/), [IGVFFI2845WUPP](/sequence-files/IGVFFI2845WUPP/), [IGVFFI4704VLBI](/sequence-files/IGVFFI4704VLBI/), [IGVFFI1067ZSDR](/sequence-files/IGVFFI1067ZSDR/), [IGVFFI4874MIQN](/sequence-files/IGVFFI4874MIQN/), [IGVFFI7649LTWL](/sequence-files/IGVFFI7649LTWL/), [IGVFFI2183ONZB](/sequence-files/IGVFFI2183ONZB/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2408JJSR/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS2408JJSR](/measurement-sets/IGVFDS2408JJSR/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS2408JJSR/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"accession": "IGVFDS6874YIXA",
"aliases": [
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],
"status": "preview"
}
],
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"creation_timestamp": "2024-11-22T00:47:23.842004+00:00",
"donors": [
{
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"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
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},
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},
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},
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},
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},
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},
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},
{
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"title": "Michael Montgomery"
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"submitted_files_timestamp": "2024-11-22T05:47:55.858326+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "6efead97-79fd-4dbf-821e-095291e63af4"
}