{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2402LHFH",
"aliases": [
"bradley-bernstein:scATAC Lib 7",
"buenrostro-bernstein:scATAC Lib 7"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2402LHFH](/measurement-sets/IGVFDS2402LHFH/) has sequence file(s): [IGVFFI1165OGGZ](/sequence-files/IGVFFI1165OGGZ/), [IGVFFI0013IIGN](/sequence-files/IGVFFI0013IIGN/), [IGVFFI4506ZPTL](/sequence-files/IGVFFI4506ZPTL/), [IGVFFI1390FOGA](/sequence-files/IGVFFI1390FOGA/), [IGVFFI2498WUMZ](/sequence-files/IGVFFI2498WUMZ/), [IGVFFI7870BYHF](/sequence-files/IGVFFI7870BYHF/), [IGVFFI7293RESH](/sequence-files/IGVFFI7293RESH/), [IGVFFI0594VVZR](/sequence-files/IGVFFI0594VVZR/), [IGVFFI9548XHBC](/sequence-files/IGVFFI9548XHBC/), [IGVFFI3395CJPA](/sequence-files/IGVFFI3395CJPA/), [IGVFFI5368DUBI](/sequence-files/IGVFFI5368DUBI/), [IGVFFI4814SOTQ](/sequence-files/IGVFFI4814SOTQ/), [IGVFFI7195VNBV](/sequence-files/IGVFFI7195VNBV/), [IGVFFI9573LHHG](/sequence-files/IGVFFI9573LHHG/), [IGVFFI6295AEXI](/sequence-files/IGVFFI6295AEXI/), [IGVFFI4283NIEF](/sequence-files/IGVFFI4283NIEF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2402LHFH/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0478TYBC](/primary-cells/IGVFSM0478TYBC/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0478TYBC/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2402LHFH](/measurement-sets/IGVFDS2402LHFH/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2402LHFH/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
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"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (26 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:23:21.452321+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "ba63b55f-0dfa-4cca-961e-35d0c352981a"
}