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IGVFDS2375PDRD

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP033_G7_ATAC

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
R3
1
Read 2
19U7CA4LE
8
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19U7CA4LE
8
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19U7CA4LE
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19U7CA4LE
6
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19U7CA4LE
7
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19U7CA4LE
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19U7CA4LE
6
10.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19U7CA4LE
7
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19U7CA4LE
8
723 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19U7CA4LE
8
382 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples

Donors

8 items
Aliases
  • igvf:corces_donor_BANN0218
male
Homo sapiens
  • igvf:corces_donor_BANN1554
male
Homo sapiens
  • igvf:corces_donor_BANN1809
male
Homo sapiens
  • igvf:corces_donor_BANN1063
male
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN0217
female
Homo sapiens
  • igvf:corces_donor_BANN0325
male
Homo sapiens
  • igvf:corces_donor_BANN1639
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP033_G7_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF