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MeasurementSet
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IGVFDS2371MSDM
IGVFDS2371MSDM
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP018_G6_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0130WGPZ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
2
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0264ZFCT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
4
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0863JZTD
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
1
368 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1192IZVT
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
2
366 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2557DRPS
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
3
377 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4691JEKO
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
3
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6205VCVO
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
2
381 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6761CCHL
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
4
383 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6812PJSK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
4
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7314TCUW
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
1
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4716JFLW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4812DEVH
igvf:corces_donor_BANN1833
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4938ZDAY
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP018_G6_ATAC
Ryan Corces, Gladstone Institute UCSF