Home
Home
Search (⌘K or ⌃K)
Data
Resources / Standards
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS2371MSDM
IGVFDS2371MSDM
preview
No limitations
Json view
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP018_G6_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0130WGPZ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
2
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0264ZFCT
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
4
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0863JZTD
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
1
368 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1192IZVT
fastq
reads
I2
1
Illumina NovaSeq X
223H55LT3
2
366 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2557DRPS
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
3
377 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4691JEKO
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
3
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6205VCVO
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
2
381 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6761CCHL
fastq
reads
I1
1
Illumina NovaSeq X
223H55LT3
4
383 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6812PJSK
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223H55LT3
4
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7314TCUW
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223H55LT3
1
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4716JFLW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO2045AFUW
igvf:corces_donor_BANN1404
male
Homo sapiens
IGVFDO3500WGWY
igvf:corces_donor_BANN1083
male
Homo sapiens
IGVFDO3795BUZW
igvf:corces_donor_BANN1311
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO4812DEVH
igvf:corces_donor_BANN1833
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO7095OCLJ
igvf:corces_donor_BANN9917
female
Homo sapiens
IGVFDO7678VYKP
igvf:corces_donor_BANN1235
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS4938ZDAY
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP018_G6_ATAC
Ryan Corces, Gladstone Institute UCSF