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INDEXED
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MeasurementSet
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IGVFDS2347LVUE
IGVFDS2347LVUE
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 180)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 448
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
33 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0326XLUV
fastq
reads
R2
8572
Read 2
IGVFFI9106OAKW
Illumina NovaSeq X
22LMVNLT4
942 MB
Jason Buenrostro, Broad
validated
IGVFFI0404IQPA
fastq
reads
R1
8476
Read 1
IGVFFI1294KKLC
Illumina NovaSeq X
22LMVNLT4
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI0710GXMD
fastq
reads
R2
4064
Read 2
IGVFFI9951IAPY
Illumina NovaSeq X
22523KLT3
727 MB
Jason Buenrostro, Broad
validated
IGVFFI1074JQKI
fastq
reads
R2
8860
Read 2
IGVFFI1065AZWO
Illumina NovaSeq X
22LMVNLT4
950 MB
Jason Buenrostro, Broad
validated
IGVFFI1253JTNW
fastq
reads
I1
8764
Barcode index
IGVFFI8197YCYZ
Illumina NovaSeq X
22LMVNLT4
565 MB
Jason Buenrostro, Broad
validated
IGVFFI1618TULU
fastq
reads
I1
8860
Barcode index
IGVFFI1065AZWO
Illumina NovaSeq X
22LMVNLT4
570 MB
Jason Buenrostro, Broad
validated
IGVFFI1769JMDN
fastq
reads
R1
8956
Read 1
IGVFFI1997RQDC
Illumina NovaSeq X
22LMVNLT4
941 MB
Jason Buenrostro, Broad
validated
IGVFFI1976YBBI
fastq
reads
R2
9052
Read 2
IGVFFI4363YGVH
Illumina NovaSeq X
22LMVNLT4
934 MB
Jason Buenrostro, Broad
validated
IGVFFI2104MJJL
fastq
reads
I1
4028
Barcode index
IGVFFI4729IYJI
Illumina NovaSeq X
22523KLT3
621 MB
Jason Buenrostro, Broad
validated
IGVFFI2585PYCR
fastq
reads
I1
8668
Barcode index
IGVFFI0691SYZW
Illumina NovaSeq X
22LMVNLT4
574 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2301XMMC
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 180)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1340WMWZ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 367
Jason Buenrostro, Broad