IGVFDS2327LLPB

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18        "status": "released",
19        "term_name": "single-nucleus ATAC-seq"
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703            {
704                "category": "mismatched status",
705                "detail": "Preview human donor [IGVFDO4812DEVH](/human-donors/IGVFDO4812DEVH/) has in progress subobject phenotypic feature [e1f4ef66-e5ec-4de4-ae91-334b64b9bc6c](/phenotypic-features/e1f4ef66-e5ec-4de4-ae91-334b64b9bc6c/).",
706                "level": 30,
707                "level_name": "INTERNAL_ACTION",
708                "name": "audit_item_status",
709                "path": "/human-donors/IGVFDO4812DEVH/"
710            },
711            {
712                "category": "mismatched status",
713                "detail": "Preview human donor [IGVFDO4812DEVH](/human-donors/IGVFDO4812DEVH/) has in progress subobject phenotypic feature [b3ccb109-8a8e-437c-a873-93aac4c48898](/phenotypic-features/b3ccb109-8a8e-437c-a873-93aac4c48898/).",
714                "level": 30,
715                "level_name": "INTERNAL_ACTION",
716                "name": "audit_item_status",
717                "path": "/human-donors/IGVFDO4812DEVH/"
718            },
719            {
720                "category": "mismatched status",
721                "detail": "Preview human donor [IGVFDO4812DEVH](/human-donors/IGVFDO4812DEVH/) has in progress subobject phenotypic feature [ad1bcdfd-6e43-47ee-8477-26145b08b0c9](/phenotypic-features/ad1bcdfd-6e43-47ee-8477-26145b08b0c9/).",
722                "level": 30,
723                "level_name": "INTERNAL_ACTION",
724                "name": "audit_item_status",
725                "path": "/human-donors/IGVFDO4812DEVH/"
726            }
727        ],
728        "NOT_COMPLIANT": [
729            {
730                "category": "missing sequence specification",
731                "detail": "Measurement set [IGVFDS2327LLPB](/measurement-sets/IGVFDS2327LLPB/) has sequence file(s): [IGVFFI8266DWBT](/sequence-files/IGVFFI8266DWBT/), [IGVFFI7585FVRQ](/sequence-files/IGVFFI7585FVRQ/), [IGVFFI4804IFPE](/sequence-files/IGVFFI4804IFPE/), [IGVFFI2748JBEJ](/sequence-files/IGVFFI2748JBEJ/), [IGVFFI9533PSCJ](/sequence-files/IGVFFI9533PSCJ/), [IGVFFI3106NENF](/sequence-files/IGVFFI3106NENF/), [IGVFFI4679QMGA](/sequence-files/IGVFFI4679QMGA/), [IGVFFI1252VNFX](/sequence-files/IGVFFI1252VNFX/), [IGVFFI0310GMAE](/sequence-files/IGVFFI0310GMAE/), [IGVFFI5917LAZZ](/sequence-files/IGVFFI5917LAZZ/), [IGVFFI3383KILT](/sequence-files/IGVFFI3383KILT/), [IGVFFI9900MLUE](/sequence-files/IGVFFI9900MLUE/), [IGVFFI1444VTGS](/sequence-files/IGVFFI1444VTGS/), [IGVFFI5659YMZY](/sequence-files/IGVFFI5659YMZY/), [IGVFFI3436CATW](/sequence-files/IGVFFI3436CATW/), [IGVFFI7094VPBM](/sequence-files/IGVFFI7094VPBM/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
732                "level": 50,
733                "level_name": "NOT_COMPLIANT",
734                "name": "audit_missing_seqspec",
735                "path": "/measurement-sets/IGVFDS2327LLPB/"
736            },
737            {
738                "category": "missing strand specificity",
739                "detail": "Measurement set [IGVFDS2327LLPB](/measurement-sets/IGVFDS2327LLPB/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
740                "level": 50,
741                "level_name": "NOT_COMPLIANT",
742                "name": "audit_missing_strand_specificity",
743                "path": "/measurement-sets/IGVFDS2327LLPB/"
744            }
745        ],
746        "WARNING": [
747            {
748                "category": "missing analysis",
749                "detail": "Measurement set [IGVFDS2327LLPB](/measurement-sets/IGVFDS2327LLPB/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
750                "level": 40,
751                "level_name": "WARNING",
752                "name": "audit_input_for",
753                "path": "/measurement-sets/IGVFDS2327LLPB/"
754            }
755        ]
756    },
757    "award": {
758        "@id": "/awards/HG012076/",
759        "component": "mapping",
760        "contact_pi": {
761            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
762            "title": "Ansuman Satpathy"
763        },
764        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
765    },
766    "control_for": [],
767    "controlled_access": false,
768    "creation_timestamp": "2025-03-19T19:56:15.239862+00:00",
769    "data_use_limitation_summaries": [
770        "No limitations"
771    ],
772    "donors": [
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774            "@id": "/human-donors/IGVFDO4825ZGIS/",
775            "accession": "IGVFDO4825ZGIS",
776            "aliases": [
777                "igvf:corces_donor_BANN2057"
778            ],
779            "sex": "male",
780            "status": "preview",
781            "taxa": "Homo sapiens"
782        },
783        {
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785            "accession": "IGVFDO4783EEYU",
786            "aliases": [
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788            ],
789            "sex": "male",
790            "status": "preview",
791            "taxa": "Homo sapiens"
792        },
793        {
794            "@id": "/human-donors/IGVFDO8584FBOT/",
795            "accession": "IGVFDO8584FBOT",
796            "aliases": [
797                "igvf:corces_donor_BANN0315"
798            ],
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800            "status": "preview",
801            "taxa": "Homo sapiens"
802        },
803        {
804            "@id": "/human-donors/IGVFDO9211DWXZ/",
805            "accession": "IGVFDO9211DWXZ",
806            "aliases": [
807                "igvf:corces_donor_BANN1352"
808            ],
809            "sex": "female",
810            "status": "preview",
811            "taxa": "Homo sapiens"
812        },
813        {
814            "@id": "/human-donors/IGVFDO9236YUAT/",
815            "accession": "IGVFDO9236YUAT",
816            "aliases": [
817                "igvf:corces_donor_BANN0227"
818            ],
819            "sex": "male",
820            "status": "preview",
821            "taxa": "Homo sapiens"
822        },
823        {
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825            "accession": "IGVFDO9299YLNH",
826            "aliases": [
827                "igvf:corces_donor_BANN1921"
828            ],
829            "sex": "male",
830            "status": "preview",
831            "taxa": "Homo sapiens"
832        },
833        {
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835            "accession": "IGVFDO8670MHXE",
836            "aliases": [
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838            ],
839            "sex": "female",
840            "status": "preview",
841            "taxa": "Homo sapiens"
842        },
843        {
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845            "accession": "IGVFDO9462VNBA",
846            "aliases": [
847                "igvf:corces_donor_BANN2003"
848            ],
849            "sex": "male",
850            "status": "preview",
851            "taxa": "Homo sapiens"
852        },
853        {
854            "@id": "/human-donors/IGVFDO2045AFUW/",
855            "accession": "IGVFDO2045AFUW",
856            "aliases": [
857                "igvf:corces_donor_BANN1404"
858            ],
859            "sex": "male",
860            "status": "preview",
861            "taxa": "Homo sapiens"
862        },
863        {
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865            "accession": "IGVFDO4103FHPT",
866            "aliases": [
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868            ],
869            "sex": "male",
870            "status": "preview",
871            "taxa": "Homo sapiens"
872        },
873        {
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875            "accession": "IGVFDO0909BNTN",
876            "aliases": [
877                "igvf:corces_donor_BANN1554"
878            ],
879            "sex": "male",
880            "status": "preview",
881            "taxa": "Homo sapiens"
882        },
883        {
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885            "accession": "IGVFDO5194SXHC",
886            "aliases": [
887                "igvf:corces_donor_BANN1747"
888            ],
889            "sex": "male",
890            "status": "preview",
891            "taxa": "Homo sapiens"
892        },
893        {
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896            "aliases": [
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898            ],
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900            "status": "preview",
901            "taxa": "Homo sapiens"
902        },
903        {
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906            "aliases": [
907                "igvf:corces_donor_BANN1639"
908            ],
909            "sex": "male",
910            "status": "preview",
911            "taxa": "Homo sapiens"
912        },
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915            "accession": "IGVFDO2848YHMH",
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918            ],
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920            "status": "preview",
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922        },
923        {
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930            "status": "preview",
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932        }
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940            "aliases": [
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953                "term_name": "Illumina NovaSeq X"
954            },
955            "status": "preview",
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957            "upload_status": "validated"
958        },
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964            ],
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967            "creation_timestamp": "2025-03-20T22:13:04.077356+00:00",
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978            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L001_R3_001.fastq.gz",
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980        },
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987            "content_type": "reads",
988            "controlled_access": false,
989            "creation_timestamp": "2025-03-20T22:13:31.604465+00:00",
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994            "sequencing_platform": {
995                "@id": "/platform-terms/EFO_0022840/",
996                "status": "released",
997                "term_name": "Illumina NovaSeq X"
998            },
999            "status": "preview",
1000            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L003_R3_001.fastq.gz",
1001            "upload_status": "validated"
1002        },
1003        {
1004            "@id": "/sequence-files/IGVFFI2748JBEJ/",
1005            "accession": "IGVFFI2748JBEJ",
1006            "aliases": [
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1008            ],
1009            "content_type": "reads",
1010            "controlled_access": false,
1011            "creation_timestamp": "2025-03-20T22:13:28.035921+00:00",
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1018                "status": "released",
1019                "term_name": "Illumina NovaSeq X"
1020            },
1021            "status": "preview",
1022            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L003_R2_001.fastq.gz",
1023            "upload_status": "validated"
1024        },
1025        {
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1027            "accession": "IGVFFI9533PSCJ",
1028            "aliases": [
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1031            "content_type": "reads",
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1040                "status": "released",
1041                "term_name": "Illumina NovaSeq X"
1042            },
1043            "status": "preview",
1044            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L002_I1_001.fastq.gz",
1045            "upload_status": "validated"
1046        },
1047        {
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1049            "accession": "IGVFFI3106NENF",
1050            "aliases": [
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1053            "content_type": "reads",
1054            "controlled_access": false,
1055            "creation_timestamp": "2025-03-20T22:13:38.671385+00:00",
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1063                "term_name": "Illumina NovaSeq X"
1064            },
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1068        },
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1072            "aliases": [
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1074            ],
1075            "content_type": "reads",
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1082            "sequencing_platform": {
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1084                "status": "released",
1085                "term_name": "Illumina NovaSeq X"
1086            },
1087            "status": "preview",
1088            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L001_I1_001.fastq.gz",
1089            "upload_status": "validated"
1090        },
1091        {
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1093            "accession": "IGVFFI1252VNFX",
1094            "aliases": [
1095                "igvf:corces_sequenceFile_ATAC_RP022_G6_P067_L001_R1"
1096            ],
1097            "content_type": "reads",
1098            "controlled_access": false,
1099            "creation_timestamp": "2025-03-20T22:12:56.636267+00:00",
1100            "file_format": "fastq",
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1104            "sequencing_platform": {
1105                "@id": "/platform-terms/EFO_0022840/",
1106                "status": "released",
1107                "term_name": "Illumina NovaSeq X"
1108            },
1109            "status": "preview",
1110            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L001_R1_001.fastq.gz",
1111            "upload_status": "validated"
1112        },
1113        {
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1115            "accession": "IGVFFI0310GMAE",
1116            "aliases": [
1117                "igvf:corces_sequenceFile_ATAC_RP022_G6_P067_L001_R2"
1118            ],
1119            "content_type": "reads",
1120            "controlled_access": false,
1121            "creation_timestamp": "2025-03-20T22:12:59.616237+00:00",
1122            "file_format": "fastq",
1123            "file_size": 961972550,
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1126            "sequencing_platform": {
1127                "@id": "/platform-terms/EFO_0022840/",
1128                "status": "released",
1129                "term_name": "Illumina NovaSeq X"
1130            },
1131            "status": "preview",
1132            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L001_R2_001.fastq.gz",
1133            "upload_status": "validated"
1134        },
1135        {
1136            "@id": "/sequence-files/IGVFFI5917LAZZ/",
1137            "accession": "IGVFFI5917LAZZ",
1138            "aliases": [
1139                "igvf:corces_sequenceFile_ATAC_RP022_G6_P067_L002_R1"
1140            ],
1141            "content_type": "reads",
1142            "controlled_access": false,
1143            "creation_timestamp": "2025-03-20T22:13:10.639623+00:00",
1144            "file_format": "fastq",
1145            "file_size": 1747480146,
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1147            "s3_uri": "s3://igvf-files/2025/03/20/8060a6cc-bc27-4d53-8098-d64cdbfb2a30/IGVFFI5917LAZZ.fastq.gz",
1148            "sequencing_platform": {
1149                "@id": "/platform-terms/EFO_0022840/",
1150                "status": "released",
1151                "term_name": "Illumina NovaSeq X"
1152            },
1153            "status": "preview",
1154            "submitted_file_name": "Multiome_ATAC_RP022_G6_L006_P067_S10_L002_R1_001.fastq.gz",
1155            "upload_status": "validated"
1156        },
1157        {
1158            "@id": "/sequence-files/IGVFFI3383KILT/",
1159            "accession": "IGVFFI3383KILT",
1160            "aliases": [
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1296    "onlist_files": [
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1298    ],
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1300    "preferred_assay_title": "10x multiome",
1301    "protocols": [
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1303    ],
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1307            "accession": "IGVFDS9414EOWY",
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1310    ],
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1312        {
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1314            "@type": [
1315                "MultiplexedSample",
1316                "Sample",
1317                "Item"
1318            ],
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1320            "aliases": [
1321                "igvf:corces_multiplexedSample_RP022_G6"
1322            ],
1323            "classifications": [
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1325                "multiplexed sample"
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1331                    "term_name": "mild cognitive impairment"
1332                },
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1337                },
1338                {
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1341                    "term_name": "cerebral amyloid angiopathy"
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1356                    "@type": [
1357                        "SampleTerm",
1358                        "OntologyTerm",
1359                        "Item"
1360                    ],
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1364                },
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1367                    "@type": [
1368                        "SampleTerm",
1369                        "OntologyTerm",
1370                        "Item"
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1375                },
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1378                    "@type": [
1379                        "SampleTerm",
1380                        "OntologyTerm",
1381                        "Item"
1382                    ],
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1384                    "summary": "cerebellar cortex",
1385                    "term_name": "cerebellar cortex"
1386                },
1387                {
1388                    "@id": "/sample-terms/UBERON_0002740/",
1389                    "@type": [
1390                        "SampleTerm",
1391                        "OntologyTerm",
1392                        "Item"
1393                    ],
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1396                    "term_name": "posterior cingulate gyrus"
1397                },
1398                {
1399                    "@id": "/sample-terms/UBERON_0002771/",
1400                    "@type": [
1401                        "SampleTerm",
1402                        "OntologyTerm",
1403                        "Item"
1404                    ],
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1408                }
1409            ],
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1412            "taxa": "Homo sapiens",
1413            "treatments": []
1414        }
1415    ],
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1421    },
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1423    "summary": "single-nucleus ATAC-seq (10x multiome)",
1424    "uuid": "4b9d4ed7-e81c-40e3-9d1d-11eb9aa82bf1"
1425}