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MeasurementSet
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IGVFDS2300TLPU
IGVFDS2300TLPU
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP011_G7_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2347XYIP
fastq
reads
I2
1
Illumina NovaSeq X
223HCCLT3
8
521 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2479RUGC
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223HCCLT3
6
3.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3770HVAA
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
8
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3949OFRB
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
7
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4129FGNP
fastq
reads
I2
1
Illumina NovaSeq X
223HCCLT3
6
516 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4216GCJH
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223HCCLT3
8
3.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4512PZZJ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
5
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4689KSWV
fastq
reads
I1
1
Illumina NovaSeq X
223HCCLT3
7
515 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5478DUFZ
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HCCLT3
6
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5558EUJZ
fastq
reads
I2
1
Illumina NovaSeq X
223HCCLT3
7
527 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM5471WRIH
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Donors
16 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO0773NPOH
igvf:corces_donor_BANN0560
male
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3497MBPK
igvf:corces_donor_BANN0002
male
Homo sapiens
IGVFDO3501RYHX
igvf:corces_donor_BANN1959
male
Homo sapiens
IGVFDO5228HTJC
igvf:corces_donor_BANN1839
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5146PTIC
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP011_G7_ATAC
Ryan Corces, Gladstone Institute UCSF