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INDEXED
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MeasurementSet
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IGVFDS2289SZHO
IGVFDS2289SZHO
released
Json view
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
Mus musculus CAST/EiJ (male, 10 weeks) left cerebral cortex tissue
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-atac-se-ewov1nm2kgr2/v1
Aliases
ansuman-satpathy:snATAC-seq_mouse_bridge_775
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0430XHJG
fastq
reads
R3
1
Read 2
IGVFFI6450AURM
Illumina NovaSeq X
22VLCLLT3
2
20 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3738RLGC
fastq
reads
R2
1
Barcode index
IGVFFI6450AURM
Illumina NovaSeq X
22VLCLLT3
2
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7536FOCA
fastq
reads
R1
1
Read 1
IGVFFI6450AURM
Illumina NovaSeq X
22VLCLLT3
2
20 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9587URMH
fastq
reads
I1
1
IGVFFI6450AURM
Illumina NovaSeq X
22VLCLLT3
2
4.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM5654SLCG
Tissue
left cerebral cortex
Mus musculus CAST/EiJ (male, 10 weeks) left cerebral cortex tissue
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8962VZTT
ali-mortazavi:775_CASTJ_10M
male
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0602EDSF
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
ansuman-satpathy:snRNA-seq_mouse_bridge_775
Ansuman Satpathy, Stanford