IGVFDS2282GLQQ

released
GRU
1{
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10    "aliases": [
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14        "@id": "/assay-terms/OBI_0002764/",
15        "assay_slims": [
16            "chromatin accessibility"
17        ],
18        "status": "released",
19        "term_name": "single-cell ATAC-seq"
20    },
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23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS2282GLQQ](/measurement-sets/IGVFDS2282GLQQ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
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29                "path": "/measurement-sets/IGVFDS2282GLQQ/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS2282GLQQ](/measurement-sets/IGVFDS2282GLQQ/) has in progress subobject tabular file [IGVFFI1312HTQX](/tabular-files/IGVFFI1312HTQX/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS2282GLQQ/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS2282GLQQ](/measurement-sets/IGVFDS2282GLQQ/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
42                "level": 30,
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44                "name": "audit_item_status",
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46            },
47            {
48                "category": "missing publication",
49                "detail": "In vitro system [IGVFSM0586LYUE](/in-vitro-systems/IGVFSM0586LYUE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_sample_missing_publication",
53                "path": "/in-vitro-systems/IGVFSM0586LYUE/"
54            }
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61            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
62            "title": "Jason Buenrostro"
63        },
64        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
65    },
66    "control_for": [],
67    "controlled_access": true,
68    "creation_timestamp": "2024-08-20T15:00:41.468835+00:00",
69    "data_use_limitation_summaries": [
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118            ],
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241            "taxa": "Homo sapiens"
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243        {
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248            ],
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511            "taxa": "Homo sapiens"
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531            "taxa": "Homo sapiens"
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611            "taxa": "Homo sapiens"
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613        {
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621            "taxa": "Homo sapiens"
622        },
623        {
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626            "aliases": [
627                "buenrostro-bernstein:Donor 1722"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
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641            "taxa": "Homo sapiens"
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643        {
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645            "accession": "IGVFDO5142SUYF",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1690"
648            ],
649            "sex": "unspecified",
650            "status": "released",
651            "taxa": "Homo sapiens"
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1842            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI3466LWIP_seqspec.yaml.gz",
1843            "upload_status": "validated"
1844        },
1845        {
1846            "@id": "/configuration-files/IGVFFI3578OCBF/",
1847            "accession": "IGVFFI3578OCBF",
1848            "aliases": [
1849                "buenrostro-bernstein:SS-LS_8828_seqspec"
1850            ],
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1853            "file_format": "yaml",
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1858            "status": "released",
1859            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI7317PFSJ_seqspec.yaml.gz",
1860            "upload_status": "validated"
1861        },
1862        {
1863            "@id": "/configuration-files/IGVFFI8981YAIO/",
1864            "accession": "IGVFFI8981YAIO",
1865            "aliases": [
1866                "buenrostro-bernstein:SS-LS_9116_seqspec"
1867            ],
1868            "content_type": "seqspec",
1869            "creation_timestamp": "2025-03-28T20:04:42.518036+00:00",
1870            "file_format": "yaml",
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1873            "md5sum": "42a99ccb97c35c64a09bc522c534fbff",
1874            "s3_uri": "s3://igvf-files/2025/03/28/0fe70ca6-331d-42a4-bba2-7e2610125874/IGVFFI8981YAIO.yaml.gz",
1875            "status": "released",
1876            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI5985SAXN_seqspec.yaml.gz",
1877            "upload_status": "validated"
1878        },
1879        {
1880            "@id": "/configuration-files/IGVFFI5269KRRZ/",
1881            "accession": "IGVFFI5269KRRZ",
1882            "aliases": [
1883                "buenrostro-bernstein:SS-LS_8924_seqspec"
1884            ],
1885            "content_type": "seqspec",
1886            "creation_timestamp": "2025-03-28T19:31:38.665552+00:00",
1887            "file_format": "yaml",
1888            "file_size": 1333,
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1890            "md5sum": "d1114ab667ec0b87c760a2d36b4b292b",
1891            "s3_uri": "s3://igvf-files/2025/03/28/853ad9bb-3c14-49aa-9723-63210c54ea5e/IGVFFI5269KRRZ.yaml.gz",
1892            "status": "released",
1893            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI4314YFPN_seqspec.yaml.gz",
1894            "upload_status": "validated"
1895        },
1896        {
1897            "@id": "/configuration-files/IGVFFI2026JSTU/",
1898            "accession": "IGVFFI2026JSTU",
1899            "aliases": [
1900                "buenrostro-bernstein:SS-LS_9020_seqspec"
1901            ],
1902            "content_type": "seqspec",
1903            "creation_timestamp": "2025-03-28T19:47:02.190195+00:00",
1904            "file_format": "yaml",
1905            "file_size": 1331,
1906            "href": "/configuration-files/IGVFFI2026JSTU/@@download/IGVFFI2026JSTU.yaml.gz",
1907            "md5sum": "71d8a847ec32ebf048006ccdfed1c080",
1908            "s3_uri": "s3://igvf-files/2025/03/28/aa254b9d-8179-4421-87fe-17ec8d3411b9/IGVFFI2026JSTU.yaml.gz",
1909            "status": "released",
1910            "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI8995UOCF_seqspec.yaml.gz",
1911            "upload_status": "validated"
1912        }
1913    ],
1914    "input_for": [
1915        "/analysis-sets/IGVFDS2258HBWX/"
1916    ],
1917    "lab": {
1918        "@id": "/labs/jason-buenrostro/",
1919        "title": "Jason Buenrostro, Broad"
1920    },
1921    "multiome_size": 2,
1922    "onlist_files": [
1923        "/tabular-files/IGVFFI1312HTQX/",
1924        "/tabular-files/IGVFFI0400MBIM/"
1925    ],
1926    "onlist_method": "product",
1927    "preferred_assay_title": "SHARE-seq",
1928    "protocols": [
1929        "https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
1930    ],
1931    "related_multiome_datasets": [
1932        {
1933            "@id": "/measurement-sets/IGVFDS2842AWFC/",
1934            "accession": "IGVFDS2842AWFC",
1935            "status": "released"
1936        }
1937    ],
1938    "release_timestamp": "2025-04-22T04:13:19.169414+00:00",
1939    "samples": [
1940        {
1941            "@id": "/in-vitro-systems/IGVFSM0586LYUE/",
1942            "@type": [
1943                "InVitroSystem",
1944                "Biosample",
1945                "Sample",
1946                "Item"
1947            ],
1948            "accession": "IGVFSM0586LYUE",
1949            "aliases": [
1950                "buenrostro-bernstein:BioSam 4880_SS-PKR 173"
1951            ],
1952            "cellular_sub_pool": "SS-PKR 173",
1953            "classifications": [
1954                "pooled cell specimen",
1955                "differentiated cell specimen"
1956            ],
1957            "institutional_certificates": [
1958                {
1959                    "@id": "/institutional-certificates/26d0a66b-5c86-4326-b305-806fb13d2ae5/",
1960                    "certificate_identifier": "IP113-01",
1961                    "controlled_access": true,
1962                    "data_use_limitation": "GRU",
1963                    "status": "released"
1964                },
1965                {
1966                    "@id": "/institutional-certificates/31aa03ce-8ec8-409b-8a6c-c115297c10f4/",
1967                    "certificate_identifier": "IP113-02",
1968                    "controlled_access": true,
1969                    "data_use_limitation": "GRU",
1970                    "status": "released"
1971                },
1972                {
1973                    "@id": "/institutional-certificates/07b1e07f-a66a-4bd5-9c1a-a8632e734789/",
1974                    "certificate_identifier": "IP113-03",
1975                    "controlled_access": true,
1976                    "data_use_limitation": "GRU",
1977                    "status": "released"
1978                },
1979                {
1980                    "@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
1981                    "certificate_identifier": "IP113-04",
1982                    "controlled_access": true,
1983                    "data_use_limitation": "GRU",
1984                    "status": "released"
1985                },
1986                {
1987                    "@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
1988                    "certificate_identifier": "IP113-05",
1989                    "controlled_access": true,
1990                    "data_use_limitation": "GRU",
1991                    "status": "released"
1992                },
1993                {
1994                    "@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
1995                    "certificate_identifier": "IP113-06",
1996                    "controlled_access": true,
1997                    "data_use_limitation": "GRU",
1998                    "status": "released"
1999                },
2000                {
2001                    "@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
2002                    "certificate_identifier": "IP113-07",
2003                    "controlled_access": true,
2004                    "data_use_limitation": "GRU",
2005                    "status": "released"
2006                },
2007                {
2008                    "@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
2009                    "certificate_identifier": "IP113-08",
2010                    "controlled_access": true,
2011                    "data_use_limitation": "GRU",
2012                    "status": "released"
2013                },
2014                {
2015                    "@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
2016                    "certificate_identifier": "IP113-09",
2017                    "controlled_access": true,
2018                    "data_use_limitation": "GRU",
2019                    "status": "released"
2020                },
2021                {
2022                    "@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
2023                    "certificate_identifier": "IP113-10",
2024                    "controlled_access": true,
2025                    "data_use_limitation": "GRU",
2026                    "status": "released"
2027                },
2028                {
2029                    "@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
2030                    "certificate_identifier": "IP113-11",
2031                    "controlled_access": true,
2032                    "data_use_limitation": "GRU",
2033                    "status": "released"
2034                },
2035                {
2036                    "@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
2037                    "certificate_identifier": "IP113-15",
2038                    "controlled_access": true,
2039                    "data_use_limitation": "GRU",
2040                    "status": "released"
2041                },
2042                {
2043                    "@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
2044                    "certificate_identifier": "IP113-12",
2045                    "controlled_access": true,
2046                    "data_use_limitation": "GRU",
2047                    "status": "released"
2048                },
2049                {
2050                    "@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
2051                    "certificate_identifier": "IP113-13",
2052                    "controlled_access": true,
2053                    "data_use_limitation": "GRU",
2054                    "status": "released"
2055                },
2056                {
2057                    "@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
2058                    "certificate_identifier": "IP113-14",
2059                    "controlled_access": true,
2060                    "data_use_limitation": "GRU",
2061                    "status": "released"
2062                },
2063                {
2064                    "@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
2065                    "certificate_identifier": "IP113-16",
2066                    "controlled_access": true,
2067                    "data_use_limitation": "GRU",
2068                    "status": "released"
2069                },
2070                {
2071                    "@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
2072                    "certificate_identifier": "IP113-18",
2073                    "controlled_access": true,
2074                    "data_use_limitation": "GRU",
2075                    "status": "released"
2076                },
2077                {
2078                    "@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
2079                    "certificate_identifier": "IP113-17",
2080                    "controlled_access": true,
2081                    "data_use_limitation": "GRU",
2082                    "status": "released"
2083                },
2084                {
2085                    "@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
2086                    "certificate_identifier": "IP113-19",
2087                    "controlled_access": true,
2088                    "data_use_limitation": "GRU",
2089                    "status": "released"
2090                },
2091                {
2092                    "@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
2093                    "certificate_identifier": "IP113-20",
2094                    "controlled_access": true,
2095                    "data_use_limitation": "GRU",
2096                    "status": "released"
2097                }
2098            ],
2099            "sample_terms": [
2100                {
2101                    "@id": "/sample-terms/EFO_0004905/",
2102                    "@type": [
2103                        "SampleTerm",
2104                        "OntologyTerm",
2105                        "Item"
2106                    ],
2107                    "status": "released",
2108                    "summary": "induced pluripotent stem cell",
2109                    "term_name": "induced pluripotent stem cell"
2110                }
2111            ],
2112            "status": "released",
2113            "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 5 days (cellular sub pool: SS-PKR 173)",
2114            "targeted_sample_term": {
2115                "@id": "/sample-terms/CL_0011020/",
2116                "status": "released",
2117                "term_name": "neural progenitor cell"
2118            },
2119            "taxa": "Homo sapiens"
2120        }
2121    ],
2122    "schema_version": "26",
2123    "status": "released",
2124    "submitted_by": {
2125        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
2126        "title": "Siddarth Wekhande"
2127    },
2128    "submitted_files_timestamp": "2024-08-20T15:21:43.229272+00:00",
2129    "summary": "single-cell ATAC-seq (SHARE-seq)",
2130    "uuid": "895aac97-0396-4f34-b02b-ad93e7237c37"
2131}