{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2273UBNR",
"aliases": [
"bradley-bernstein:scATAC Lib 46",
"buenrostro-bernstein:scATAC Lib 46"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2273UBNR](/measurement-sets/IGVFDS2273UBNR/) has sequence file(s): [IGVFFI7086ALVL](/sequence-files/IGVFFI7086ALVL/), [IGVFFI0656RVBP](/sequence-files/IGVFFI0656RVBP/), [IGVFFI7369PEUM](/sequence-files/IGVFFI7369PEUM/), [IGVFFI3227OUOF](/sequence-files/IGVFFI3227OUOF/), [IGVFFI7934LSTA](/sequence-files/IGVFFI7934LSTA/), [IGVFFI7397NTAQ](/sequence-files/IGVFFI7397NTAQ/), [IGVFFI7066GIZF](/sequence-files/IGVFFI7066GIZF/), [IGVFFI6281YKYV](/sequence-files/IGVFFI6281YKYV/), [IGVFFI8839VIIY](/sequence-files/IGVFFI8839VIIY/), [IGVFFI5801HDWE](/sequence-files/IGVFFI5801HDWE/), [IGVFFI1220ZZEF](/sequence-files/IGVFFI1220ZZEF/), [IGVFFI8725VZLX](/sequence-files/IGVFFI8725VZLX/), [IGVFFI8150MRRH](/sequence-files/IGVFFI8150MRRH/), [IGVFFI3477KJZO](/sequence-files/IGVFFI3477KJZO/), [IGVFFI3994RSYX](/sequence-files/IGVFFI3994RSYX/), [IGVFFI8846TSHO](/sequence-files/IGVFFI8846TSHO/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2273UBNR/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8189RYZE](/primary-cells/IGVFSM8189RYZE/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8189RYZE/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2273UBNR](/measurement-sets/IGVFDS2273UBNR/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2273UBNR/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 8",
"buenrostro-bernstein:BioSam 4566_SS-PKR 8"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:15.224287+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "86d5d6c5-2f1a-4f08-b080-ed6807b06f35"
}