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IGVFDS2259DWKL

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Human intestinal organoids derived from IBD patients and healthy controls
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens colon epithelial cell organoid induced to colon for 7 days
Protocols
Aliases
buenrostro-bernstein:surya-human-organoids_mm-set38
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
I1
1
Barcode index
5.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
1
Read 2
10 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
1
Read 1
9.9 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens colon epithelial cell organoid induced to colon for 7 days

Donors

6 items
Aliases
  • buenrostro-bernstein:surya-H443 1_to_16
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H456 17_to_32
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H514 73_to_88
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H511 49_to_56
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H371 57_to_72
unspecified
Homo sapiens
  • buenrostro-bernstein:surya-H492A 89_to_96
unspecified
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-human-invitro-analysis-set
Jason Buenrostro, Broad

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-human-organoids_mm-set39
Jason Buenrostro, Broad