{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2248KOLH",
"aliases": [
"bradley-bernstein:scATAC Lib 10",
"buenrostro-bernstein:scATAC Lib 10"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM9691RJDN](/primary-cells/IGVFSM9691RJDN/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM9691RJDN/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2248KOLH](/measurement-sets/IGVFDS2248KOLH/) has sequence file(s): [IGVFFI4703OYBY](/sequence-files/IGVFFI4703OYBY/), [IGVFFI2604QSZW](/sequence-files/IGVFFI2604QSZW/), [IGVFFI8190WGWN](/sequence-files/IGVFFI8190WGWN/), [IGVFFI0349SJHD](/sequence-files/IGVFFI0349SJHD/), [IGVFFI4995UVFV](/sequence-files/IGVFFI4995UVFV/), [IGVFFI7067UWWP](/sequence-files/IGVFFI7067UWWP/), [IGVFFI6326SKNE](/sequence-files/IGVFFI6326SKNE/), [IGVFFI7906YZVP](/sequence-files/IGVFFI7906YZVP/), [IGVFFI3519RQDH](/sequence-files/IGVFFI3519RQDH/), [IGVFFI9446VGFB](/sequence-files/IGVFFI9446VGFB/), [IGVFFI8719AJYB](/sequence-files/IGVFFI8719AJYB/), [IGVFFI9815QNST](/sequence-files/IGVFFI9815QNST/), [IGVFFI8064QIPA](/sequence-files/IGVFFI8064QIPA/), [IGVFFI9844RUKH](/sequence-files/IGVFFI9844RUKH/), [IGVFFI9203TXCM](/sequence-files/IGVFFI9203TXCM/), [IGVFFI5353SQUR](/sequence-files/IGVFFI5353SQUR/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2248KOLH/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2248KOLH](/measurement-sets/IGVFDS2248KOLH/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2248KOLH/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"accession": "IGVFSM9691RJDN",
"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 2",
"buenrostro-bernstein:BioSam 4566_SS-PKR 2"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:35:48.786777+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "9f3bf326-b164-41a2-a63e-5f0b82147410"
}