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IGVFDS2229EHIM
IGVFDS2229EHIM
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP011_G1_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0313OTYB
fastq
reads
I1
1
Illumina NovaSeq X
225CCCLT3
6
429 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2523JEIJ
fastq
reads
I1
1
Illumina NovaSeq X
225CCCLT3
8
470 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3352ONFV
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
225CCCLT3
5
977 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3382TVVY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
225CCCLT3
6
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3861EYAP
fastq
reads
I1
1
Illumina NovaSeq X
225CCCLT3
5
440 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4355ALFF
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
225CCCLT3
6
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5435GOOT
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
225CCCLT3
8
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5774ZYAZ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
225CCCLT3
6
951 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6010UOCX
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
225CCCLT3
7
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6044ZYDH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
225CCCLT3
5
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4137SEKT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples
Donors
16 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0698ZMAQ
igvf:corces_donor_BANN1569
male
Homo sapiens
IGVFDO0773NPOH
igvf:corces_donor_BANN0560
male
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO1797DNPW
igvf:corces_donor_BANN1827
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO2928PSUK
igvf:corces_donor_BANN0950
male
Homo sapiens
IGVFDO3497MBPK
igvf:corces_donor_BANN0002
male
Homo sapiens
IGVFDO3501RYHX
igvf:corces_donor_BANN1959
male
Homo sapiens
IGVFDO5228HTJC
igvf:corces_donor_BANN1839
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS3628MXUK
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP011_G1_RNA
Ryan Corces, Gladstone Institute UCSF