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IGVFDS2207IIRU

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File Set Type
experimental data
Summary
lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
Assay Term
massively parallel reporter assay
Sample Summaries
  • Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library
Protocols
Aliases
jesse-engreitz:THP1-PPIF_promoter_lentiMPRA_BioRep1_RNA_BarcodeSequencing
Attribution
Jesse Engreitz, Stanford

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
I1
1
346 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
321 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
323 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_THP1
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting sequence variants in a genomic locus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
lentiMPRA: reporter experiment
  • jesse-engreitz:PPIF_promoter_lentiMPRA_MPRAsnakeflow_analysis
Jesse Engreitz, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting sequence variants in a genomic locus
  • jesse-engreitz:THP1-PPIF_promoter_lentiMPRA_BioRep1_DNA_BarcodeSequencing
Jesse Engreitz, Stanford