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INDEXED
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MeasurementSet
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IGVFDS2186PCOF
IGVFDS2186PCOF
released
Json view
File Set Type
experimental data
Summary
snMCT-seq
Assay Term
single-nucleus methylcytosine and transcriptome sequencing assay
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days, Homo sapiens
Protocols
https://www.protocols.io/view/snmcat-v2-x54v9jby1g3e/v2
Aliases
chongyuan-luo:pgp_snmct_C39_day12
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1402IIOH
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
4
7.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI3429LZHM
fastq
reads
R1
1
Illumina NovaSeq X
4
7.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI3791WOAH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
2
7.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI4212BRFQ
fastq
reads
R1
1
Illumina NovaSeq X
1
7.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI6398HWNU
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
3
7.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI7948EUIX
fastq
reads
R2
2
Illumina NovaSeq X
1
7.8 GB
Chongyuan Luo, UCLA
validated
IGVFFI8118YTVT
fastq
reads
R2
2
Illumina NovaSeq X
3
7.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI8711OWAV
fastq
reads
R2
2
Illumina NovaSeq X
2
7.7 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3009NMJU
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO4068JJIT
chongyuan-luo:C39
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA