{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2157LEAI/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2157LEAI",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS2157LEAI](/measurement-sets/IGVFDS2157LEAI/) has sequence file(s) [IGVFFI0801ZZJK](/sequence-files/IGVFFI0801ZZJK/), [IGVFFI5025QRHM](/sequence-files/IGVFFI5025QRHM/), [IGVFFI1318ZQGJ](/sequence-files/IGVFFI1318ZQGJ/), [IGVFFI4963SYZF](/sequence-files/IGVFFI4963SYZF/), [IGVFFI0613CTPO](/sequence-files/IGVFFI0613CTPO/), [IGVFFI7627CVDO](/sequence-files/IGVFFI7627CVDO/), [IGVFFI9401SXDQ](/sequence-files/IGVFFI9401SXDQ/), [IGVFFI6750AEZS](/sequence-files/IGVFFI6750AEZS/), [IGVFFI3552NDJN](/sequence-files/IGVFFI3552NDJN/), [IGVFFI6347GLHK](/sequence-files/IGVFFI6347GLHK/), [IGVFFI5575ORYG](/sequence-files/IGVFFI5575ORYG/), [IGVFFI0934FSRE](/sequence-files/IGVFFI0934FSRE/), [IGVFFI3796VKYW](/sequence-files/IGVFFI3796VKYW/), [IGVFFI2885BUJM](/sequence-files/IGVFFI2885BUJM/), [IGVFFI5173QYPB](/sequence-files/IGVFFI5173QYPB/), [IGVFFI1029VVVW](/sequence-files/IGVFFI1029VVVW/), [IGVFFI1947JVYI](/sequence-files/IGVFFI1947JVYI/), [IGVFFI8953NBQX](/sequence-files/IGVFFI8953NBQX/), [IGVFFI9578QJAG](/sequence-files/IGVFFI9578QJAG/), [IGVFFI5232WRME](/sequence-files/IGVFFI5232WRME/), [IGVFFI0119WTXW](/sequence-files/IGVFFI0119WTXW/), [IGVFFI6126JLYO](/sequence-files/IGVFFI6126JLYO/), [IGVFFI2868VSMP](/sequence-files/IGVFFI2868VSMP/), [IGVFFI1497EGKW](/sequence-files/IGVFFI1497EGKW/), [IGVFFI0324IXMO](/sequence-files/IGVFFI0324IXMO/), [IGVFFI6770HRPL](/sequence-files/IGVFFI6770HRPL/), [IGVFFI5185VCMP](/sequence-files/IGVFFI5185VCMP/), [IGVFFI0983VSOC](/sequence-files/IGVFFI0983VSOC/), [IGVFFI0475TIQY](/sequence-files/IGVFFI0475TIQY/), [IGVFFI6825EIKJ](/sequence-files/IGVFFI6825EIKJ/), [IGVFFI3311TZLP](/sequence-files/IGVFFI3311TZLP/), [IGVFFI3741WODG](/sequence-files/IGVFFI3741WODG/), [IGVFFI6556RTWH](/sequence-files/IGVFFI6556RTWH/), [IGVFFI1565SEBA](/sequence-files/IGVFFI1565SEBA/), [IGVFFI2935CSSX](/sequence-files/IGVFFI2935CSSX/), [IGVFFI6284SCCX](/sequence-files/IGVFFI6284SCCX/), [IGVFFI0984OMZQ](/sequence-files/IGVFFI0984OMZQ/), [IGVFFI5041XJHH](/sequence-files/IGVFFI5041XJHH/), [IGVFFI2163HOMT](/sequence-files/IGVFFI2163HOMT/), [IGVFFI2431YNJV](/sequence-files/IGVFFI2431YNJV/), [IGVFFI2638KMFA](/sequence-files/IGVFFI2638KMFA/), [IGVFFI6615BFNS](/sequence-files/IGVFFI6615BFNS/), [IGVFFI7002BXQJ](/sequence-files/IGVFFI7002BXQJ/), [IGVFFI7104EGZQ](/sequence-files/IGVFFI7104EGZQ/), [IGVFFI6324HSQX](/sequence-files/IGVFFI6324HSQX/), [IGVFFI0233SWQQ](/sequence-files/IGVFFI0233SWQQ/), [IGVFFI0911GMRB](/sequence-files/IGVFFI0911GMRB/), [IGVFFI7698MFBM](/sequence-files/IGVFFI7698MFBM/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS2157LEAI/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2157LEAI](/measurement-sets/IGVFDS2157LEAI/) has sequence file(s): [IGVFFI0801ZZJK](/sequence-files/IGVFFI0801ZZJK/), [IGVFFI5025QRHM](/sequence-files/IGVFFI5025QRHM/), [IGVFFI1318ZQGJ](/sequence-files/IGVFFI1318ZQGJ/), [IGVFFI4963SYZF](/sequence-files/IGVFFI4963SYZF/), [IGVFFI0613CTPO](/sequence-files/IGVFFI0613CTPO/), [IGVFFI7627CVDO](/sequence-files/IGVFFI7627CVDO/), [IGVFFI9401SXDQ](/sequence-files/IGVFFI9401SXDQ/), [IGVFFI6750AEZS](/sequence-files/IGVFFI6750AEZS/), [IGVFFI3552NDJN](/sequence-files/IGVFFI3552NDJN/), [IGVFFI6347GLHK](/sequence-files/IGVFFI6347GLHK/), [IGVFFI5575ORYG](/sequence-files/IGVFFI5575ORYG/), [IGVFFI0934FSRE](/sequence-files/IGVFFI0934FSRE/), [IGVFFI3796VKYW](/sequence-files/IGVFFI3796VKYW/), [IGVFFI2885BUJM](/sequence-files/IGVFFI2885BUJM/), [IGVFFI5173QYPB](/sequence-files/IGVFFI5173QYPB/), [IGVFFI1029VVVW](/sequence-files/IGVFFI1029VVVW/), [IGVFFI1947JVYI](/sequence-files/IGVFFI1947JVYI/), [IGVFFI8953NBQX](/sequence-files/IGVFFI8953NBQX/), [IGVFFI9578QJAG](/sequence-files/IGVFFI9578QJAG/), [IGVFFI5232WRME](/sequence-files/IGVFFI5232WRME/), [IGVFFI0119WTXW](/sequence-files/IGVFFI0119WTXW/), [IGVFFI6126JLYO](/sequence-files/IGVFFI6126JLYO/), [IGVFFI2868VSMP](/sequence-files/IGVFFI2868VSMP/), [IGVFFI1497EGKW](/sequence-files/IGVFFI1497EGKW/), [IGVFFI0324IXMO](/sequence-files/IGVFFI0324IXMO/), [IGVFFI6770HRPL](/sequence-files/IGVFFI6770HRPL/), [IGVFFI5185VCMP](/sequence-files/IGVFFI5185VCMP/), [IGVFFI0983VSOC](/sequence-files/IGVFFI0983VSOC/), [IGVFFI0475TIQY](/sequence-files/IGVFFI0475TIQY/), [IGVFFI6825EIKJ](/sequence-files/IGVFFI6825EIKJ/), [IGVFFI3311TZLP](/sequence-files/IGVFFI3311TZLP/), [IGVFFI3741WODG](/sequence-files/IGVFFI3741WODG/), [IGVFFI6556RTWH](/sequence-files/IGVFFI6556RTWH/), [IGVFFI1565SEBA](/sequence-files/IGVFFI1565SEBA/), [IGVFFI2935CSSX](/sequence-files/IGVFFI2935CSSX/), [IGVFFI6284SCCX](/sequence-files/IGVFFI6284SCCX/), [IGVFFI0984OMZQ](/sequence-files/IGVFFI0984OMZQ/), [IGVFFI5041XJHH](/sequence-files/IGVFFI5041XJHH/), [IGVFFI2163HOMT](/sequence-files/IGVFFI2163HOMT/), [IGVFFI2431YNJV](/sequence-files/IGVFFI2431YNJV/), [IGVFFI2638KMFA](/sequence-files/IGVFFI2638KMFA/), [IGVFFI6615BFNS](/sequence-files/IGVFFI6615BFNS/), [IGVFFI7002BXQJ](/sequence-files/IGVFFI7002BXQJ/), [IGVFFI7104EGZQ](/sequence-files/IGVFFI7104EGZQ/), [IGVFFI6324HSQX](/sequence-files/IGVFFI6324HSQX/), [IGVFFI0233SWQQ](/sequence-files/IGVFFI0233SWQQ/), [IGVFFI0911GMRB](/sequence-files/IGVFFI0911GMRB/), [IGVFFI7698MFBM](/sequence-files/IGVFFI7698MFBM/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2157LEAI/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2364KNYW](/in-vitro-systems/IGVFSM2364KNYW/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2364KNYW/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS2157LEAI](/measurement-sets/IGVFDS2157LEAI/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS2157LEAI/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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],
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}
],
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{
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
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"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "60ebb812-6529-42de-8be6-b9bbe8fd9474"
}