IGVFDS2143YNMR

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 167)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 367

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0117JKWX

fastq

reads

9007

IGVFFI5577AQUH

Illumina NovaSeq X

22LMVNLT4

328 MB

Jason Buenrostro, Broad

validated

IGVFFI0187RLFQ

fastq

reads

9103

IGVFFI4928GLUQ

Illumina NovaSeq X

22LMVNLT4

299 MB

Jason Buenrostro, Broad

validated

IGVFFI0217EFPL

fastq

reads

8719

IGVFFI0111DSYJ

Illumina NovaSeq X

22LMVNLT4

321 MB

Jason Buenrostro, Broad

validated

IGVFFI0374FJWR

fastq

reads

8623

IGVFFI3824LQGE

Illumina NovaSeq X

22LMVNLT4

327 MB

Jason Buenrostro, Broad

validated

IGVFFI0681QTJK

fastq

reads

8719

Barcode index

IGVFFI0111DSYJ

Illumina NovaSeq X

22LMVNLT4

192 MB

Jason Buenrostro, Broad

validated

IGVFFI1159FKCT

fastq

reads

801

IGVFFI0013RVYT

Illumina NovaSeq X

22773CLT3

719 MB

Jason Buenrostro, Broad

validated

IGVFFI1284JFXD

fastq

reads

9007

Barcode index

IGVFFI5577AQUH

Illumina NovaSeq X

22LMVNLT4

189 MB

Jason Buenrostro, Broad

validated

IGVFFI1723XGEO

fastq

reads

8815

IGVFFI3703OSXE

Illumina NovaSeq X

22LMVNLT4

335 MB

Jason Buenrostro, Broad

validated

IGVFFI1740JGJI

fastq

reads

9103

Barcode index

IGVFFI4928GLUQ

Illumina NovaSeq X

22LMVNLT4

182 MB

Jason Buenrostro, Broad

validated

IGVFFI2434ZZTC

fastq

reads

8527

Barcode index

IGVFFI0587WVIJ

Illumina NovaSeq X

22LMVNLT4

191 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM6156GCOZ

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 167)