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IGVFDS2143BSOH

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File Set Type
experimental data
Summary
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
  • GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW281), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
Construct Library Sets
  • IGVFDS2302LCEO guide (sgRNA) library targeting accessible genome regions in many genomic loci
Protocols
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_LW281
Submitter Comment
Transcriptiome for LW281

Sequencing Results (Illumina)

8 items
fastq
reads
R1
1
AAC7VLGHV
1
217 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
2
503 MB
Gary Hon, UT
validated
fastq
reads
R1
1
AAC7VLGHV
2
215 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
2
75 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
2
76 MB
Gary Hon, UT
validated
fastq
reads
I1
1
AAC7VLGHV
1
75 MB
Gary Hon, UT
validated
fastq
reads
I2
1
AAC7VLGHV
1
79 MB
Gary Hon, UT
validated
fastq
reads
R2
1
AAC7VLGHV
1
511 MB
Gary Hon, UT
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neural stem cell for 20 days (cellular sub pool: subpool_LW281), male, Homo sapiens modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
  • gary-hon:WTC11_TF_Perturb_Seq_Pilot_NPC_Lenti_PrimaryAnalysis
Gary Hon, UT

Auxiliary Datasets

2 items
Files
AuxiliarySet
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_HTO_LW281
Gary Hon, UT
AuxiliarySet
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • gary-hon:TF_Perturb_Seq_Pilot_Lenti_NPC_sgRNA_LW281
Gary Hon, UT

Attribution

Award
HG011996
Principal Investigator(s)
Contact P.I.
Gary Hon
Lab
Gary Hon, UT