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IGVFDS2066AADV

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP022_G4_ATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R3
1
Read 2
223HC3LT3
1
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HC3LT3
2
471 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HC3LT3
2
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HC3LT3
3
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HC3LT3
3
466 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223HC3LT3
4
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223HC3LT3
2
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HC3LT3
4
466 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HC3LT3
4
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223HC3LT3
3
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 14 more samples

Donors

16 items
Aliases
  • igvf:corces_donor_BANN1554
male
Homo sapiens
  • igvf:corces_donor_BANN1973
male
Homo sapiens
  • igvf:corces_donor_BANN1404
male
Homo sapiens
  • igvf:corces_donor_BANN2038
male
Homo sapiens
  • igvf:corces_donor_BANN9702
male
Homo sapiens
  • igvf:corces_donor_BANN1865
male
Homo sapiens
  • igvf:corces_donor_BANN1833
male
Homo sapiens
  • igvf:corces_donor_BANN2057
male
Homo sapiens
  • igvf:corces_donor_BANN1747
male
Homo sapiens
  • igvf:corces_donor_BANN1639
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP022_G4_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF