IGVFDS2060SJIY

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus ATAC-seq (10x multiome)

Assay Term

single-nucleus ATAC-seq

Sample Summaries

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X021_G1_ATAC

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI5022VYZF

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

9.9 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI5628EGBD

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

10 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI5839PRWM

fastq

reads

Barcode index

Illumina NovaSeq 6000

HV7NNDSX5

5.5 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI7727QKZI

fastq

reads

Illumina NovaSeq 6000

HV7NNDSX5

2.3 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM7942VHUU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples