Home

IGVFDS2060SJIY

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X021_G1_ATAC

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R1
1
Read 1
HV7NNDSX5
3
9.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
HV7NNDSX5
3
10 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
HV7NNDSX5
3
5.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
HV7NNDSX5
3
2.3 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN0138
female
Homo sapiens
  • igvf:corces_donor_BANN1506
male
Homo sapiens
  • igvf:corces_donor_BANN1256
female
Homo sapiens
  • igvf:corces_donor_BANN1083
male
Homo sapiens
  • igvf:corces_donor_BANN0348
male
Homo sapiens
  • igvf:corces_donor_BANN0124
male
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN1234
male
Homo sapiens
  • igvf:corces_donor_BANN1349
female
Homo sapiens
  • igvf:corces_donor_BANN1756
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X021_G1_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF