IGVFDS2046SNMC

released

File Set Type

experimental data

Summary

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci

Assay Term

in vitro CRISPR screen using flow cytometry

Targeted Genes

CCND1

Sample Summaries

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Construct Library Sets

IGVFDS0392OWNZ guide (sgRNA) library targeting accessible genome regions in 36 genomic loci

Protocols

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

Aliases

jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinC-PCR1_S75

jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinC-PCR2_S171

jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinC-PCR3_S267

jesse-engreitz:measurement_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinC-PCR4_S363

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM5079ZTJX

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Donors

1 item

Accession

Aliases

Sex

Taxa

IGVFDO0384OZRW

igvf:donor_of_HCT116

male

Homo sapiens

Auxiliary Datasets

2 items

Files

IGVFDS5292OCBC

AuxiliarySet

cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci, ... and 4 more measurement sets

IGVFFI8738YMCU