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IGVFDS2020PTEI

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples
Protocols
Aliases
igvf:corces_measurementSet_X056_G3_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R2
1
Barcode index
19NHCA4LE
3
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19NHCA4LE
2
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19NHCA4LE
3
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
19NHCA4LE
2
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
3
12 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
19NHCA4LE
2
12 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
19NHCA4LE
2
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
19NHCA4LE
3
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples

Donors

10 items
Aliases
  • igvf:corces_donor_BANN1750
male
Homo sapiens
  • igvf:corces_donor_BANN0138
female
Homo sapiens
  • igvf:corces_donor_BANN1170
male
Homo sapiens
  • igvf:corces_donor_BANN1864
male
Homo sapiens
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN1504
female
Homo sapiens
  • igvf:corces_donor_BANN0621
male
Homo sapiens
  • igvf:corces_donor_BANN0874
female
Homo sapiens
  • igvf:corces_donor_BANN1352
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X056_G3_RNA
Ryan Corces, Gladstone Institute UCSF