IGVFDS2004SFUP

1{
2    "@context": "/terms/",
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7        "Item"
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10    "aliases": [
11        "ali-mortazavi:010_67E_illumina"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS2004SFUP](/measurement-sets/IGVFDS2004SFUP/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/measurement-sets/IGVFDS2004SFUP/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS2004SFUP](/measurement-sets/IGVFDS2004SFUP/) has in progress subobject tabular file [IGVFFI4529PWCF](/tabular-files/IGVFFI4529PWCF/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS2004SFUP/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS2004SFUP](/measurement-sets/IGVFDS2004SFUP/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS2004SFUP/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS2004SFUP](/measurement-sets/IGVFDS2004SFUP/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS2004SFUP/"
54            },
55            {
56                "category": "missing publication",
57                "detail": "Multiplexed sample [IGVFSM9196BYCA](/multiplexed-samples/IGVFSM9196BYCA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_sample_missing_publication",
61                "path": "/multiplexed-samples/IGVFSM9196BYCA/"
62            }
63        ]
64    },
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66        "@id": "/awards/HG012077/",
67        "component": "mapping",
68        "contact_pi": {
69            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
70            "title": "Ali Mortazavi"
71        },
72        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
73    },
74    "barcode_replacement_file": "/tabular-files/IGVFFI4529PWCF/",
75    "control_for": [],
76    "creation_timestamp": "2023-10-13T17:19:52.557833+00:00",
77    "data_use_limitation_summaries": [
78        "no certificate"
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113        },
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596            "taxa": "Mus musculus"
597        },
598        {
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602                "ali-mortazavi:038_129S1J_10F"
603            ],
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605            "status": "released",
606            "strain_background": "129S1/SvImJ (129)",
607            "taxa": "Mus musculus"
608        },
609        {
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611            "accession": "IGVFDO0813DZTW",
612            "aliases": [
613                "ali-mortazavi:069_NODJ_10M"
614            ],
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616            "status": "released",
617            "strain_background": "NOD/ShiLtJ (NOD)",
618            "taxa": "Mus musculus"
619        },
620        {
621            "@id": "/rodent-donors/IGVFDO4469VYEZ/",
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1279    ],
1280    "input_for": [
1281        "/analysis-sets/IGVFDS7097RQTH/"
1282    ],
1283    "lab": {
1284        "@id": "/labs/ali-mortazavi/",
1285        "title": "Ali Mortazavi, UCI"
1286    },
1287    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
1288    "onlist_files": [
1289        "/tabular-files/IGVFFI2591OFQO/",
1290        "/tabular-files/IGVFFI1138MCVX/"
1291    ],
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1293    "preferred_assay_title": "Parse SPLiT-seq",
1294    "protocols": [
1295        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n2bvj3noplk5/v2",
1296        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
1297        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
1298        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
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1310            "aliases": [
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1316                "multiplexed sample"
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1324                    "@type": [
1325                        "SampleTerm",
1326                        "OntologyTerm",
1327                        "Item"
1328                    ],
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1336                        "SampleTerm",
1337                        "OntologyTerm",
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1347            "taxa": "Mus musculus",
1348            "treatments": []
1349        }
1350    ],
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1359        "title": "Diane Trout"
1360    },
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1362    "summary": "Parse SPLiT-seq",
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1364}