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INDEXED
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MeasurementSet
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IGVFDS1989TSQP
IGVFDS1989TSQP
released
Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C38_day3
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1336HGXA
fastq
reads
R2
2
Illumina NovaSeq X
3
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1377BTNZ
fastq
reads
R1
1
Illumina NovaSeq X
8
2.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI1999IICS
fastq
reads
R1
1
Illumina NovaSeq X
2
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2432PPXT
fastq
reads
R2
2
Illumina NovaSeq X
1
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2780MCHC
fastq
reads
R1
1
Illumina NovaSeq X
6
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI3073NTNE
fastq
reads
R2
2
Illumina NovaSeq X
5
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI3134SKPW
fastq
reads
R2
2
Illumina NovaSeq X
6
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI4438LKCF
fastq
reads
R2
2
Illumina NovaSeq X
7
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5220IEFT
fastq
reads
R1
1
Illumina NovaSeq X
3
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5404VXLJ
fastq
reads
R1
1
Illumina NovaSeq X
5
2.6 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1041YTQX
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2328XGNY
chongyuan-luo:C38
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA