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MeasurementSet
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IGVFDS1989TSQP
IGVFDS1989TSQP
released
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Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C38_day3
Attribution
Chongyuan Luo, UCLA
(
HG012079
—
Chongyuan Luo
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1336HGXA
fastq
reads
R2
2
Illumina NovaSeq X
3
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI1377BTNZ
fastq
reads
R1
1
Illumina NovaSeq X
8
2.5 GB
Chongyuan Luo, UCLA
validated
IGVFFI1999IICS
fastq
reads
R1
1
Illumina NovaSeq X
2
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2432PPXT
fastq
reads
R2
2
Illumina NovaSeq X
1
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI2780MCHC
fastq
reads
R1
1
Illumina NovaSeq X
6
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI3073NTNE
fastq
reads
R2
2
Illumina NovaSeq X
5
2.7 GB
Chongyuan Luo, UCLA
validated
IGVFFI3134SKPW
fastq
reads
R2
2
Illumina NovaSeq X
6
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI4438LKCF
fastq
reads
R2
2
Illumina NovaSeq X
7
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5220IEFT
fastq
reads
R1
1
Illumina NovaSeq X
3
2.6 GB
Chongyuan Luo, UCLA
validated
IGVFFI5404VXLJ
fastq
reads
R1
1
Illumina NovaSeq X
5
2.6 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1041YTQX
InVitroSystem
fibroblast
Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2328XGNY
chongyuan-luo:C38
unspecified
Homo sapiens