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INDEXED
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MeasurementSet
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IGVFDS1967FHKL
IGVFDS1967FHKL
released
Json view
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
left cerebral cortex tissue, female, Mus musculus C57BL/6J (10 weeks)
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-atac-se-ewov1nm2kgr2/v1
Aliases
ansuman-satpathy:snATAC-seq_mouse_bridge_116
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0599BUEC
fastq
reads
R2
1
Barcode index
IGVFFI4099YJAX
Illumina NovaSeq 6000
HV7LKDSX5
1
7.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI0780GMLK
fastq
reads
R3
1
Read 2
IGVFFI4099YJAX
Illumina NovaSeq 6000
HV7LKDSX5
1
23 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7842VQRM
fastq
reads
R1
1
Read 1
IGVFFI4099YJAX
Illumina NovaSeq 6000
HV7LKDSX5
1
23 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9383DDZQ
fastq
reads
I1
1
IGVFFI4099YJAX
Illumina NovaSeq 6000
HV7LKDSX5
1
3.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0501LYEC
Tissue
left cerebral cortex
left cerebral cortex tissue, female, Mus musculus C57BL/6J (10 weeks)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO6027HZDJ
ansuman-satpathy:116_B6J_10F
female
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0222OXIK
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
ansuman-satpathy:snRNA-seq_mouse_bridge_116
Ansuman Satpathy, Stanford
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford