{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1943EBIK/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1943EBIK",
"aliases": [
"buenrostro-bernstein:scATAC Lib 554"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7761CZVT](/in-vitro-systems/IGVFSM7761CZVT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7761CZVT/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS1943EBIK](/measurement-sets/IGVFDS1943EBIK/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS1943EBIK/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1943EBIK](/measurement-sets/IGVFDS1943EBIK/) has in progress subobject tabular file [IGVFFI8433TDKP](/tabular-files/IGVFFI8433TDKP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1943EBIK/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1943EBIK](/measurement-sets/IGVFDS1943EBIK/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1943EBIK/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing multiome size",
"detail": "Measurement set [IGVFDS1943EBIK](/measurement-sets/IGVFDS1943EBIK/) has no `multiome_size`. Measurement sets from multiome assays are expected to specify a multiome size.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_related_multiome_datasets",
"path": "/measurement-sets/IGVFDS1943EBIK/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:56:14.153143+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO1467HGMO/",
"accession": "IGVFDO1467HGMO",
"aliases": [
"buenrostro-bernstein:Donor 1969"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
"accession": "IGVFDO3154SUBV",
"aliases": [
"buenrostro-bernstein:Donor 1746"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4924NHKE/",
"accession": "IGVFDO4924NHKE",
"aliases": [
"buenrostro-bernstein:Donor 1970"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1255IJEH/",
"accession": "IGVFDO1255IJEH",
"aliases": [
"buenrostro-bernstein:Donor 1975"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8033HKMP/",
"accession": "IGVFDO8033HKMP",
"aliases": [
"buenrostro-bernstein:Donor 1947"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6338EGAL/",
"accession": "IGVFDO6338EGAL",
"aliases": [
"buenrostro-bernstein:Donor 1977"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5920NCRK/",
"accession": "IGVFDO5920NCRK",
"aliases": [
"buenrostro-bernstein:Donor 1973"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1533MKVB/",
"accession": "IGVFDO1533MKVB",
"aliases": [
"buenrostro-bernstein:Donor 1739"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2540COFN/",
"accession": "IGVFDO2540COFN",
"aliases": [
"buenrostro-bernstein:Donor 1912"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4761JIBM/",
"accession": "IGVFDO4761JIBM",
"aliases": [
"buenrostro-bernstein:Donor 1960"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9261YIGN/",
"accession": "IGVFDO9261YIGN",
"aliases": [
"buenrostro-bernstein:Donor 1930"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9561MSAD/",
"accession": "IGVFDO9561MSAD",
"aliases": [
"buenrostro-bernstein:Donor 1976"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3082FYQJ/",
"accession": "IGVFDO3082FYQJ",
"aliases": [
"buenrostro-bernstein:Donor 1972"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3701XUXY/",
"accession": "IGVFDO3701XUXY",
"aliases": [
"buenrostro-bernstein:Donor 1959"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6156FWSA/",
"accession": "IGVFDO6156FWSA",
"aliases": [
"buenrostro-bernstein:Donor 1790"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5885PQJM/",
"accession": "IGVFDO5885PQJM",
"aliases": [
"buenrostro-bernstein:Donor 1658"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1064GZAS/",
"accession": "IGVFDO1064GZAS",
"aliases": [
"buenrostro-bernstein:Donor 1982"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8004EZUP/",
"accession": "IGVFDO8004EZUP",
"aliases": [
"buenrostro-bernstein:Donor 1962"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2674JORG/",
"accession": "IGVFDO2674JORG",
"aliases": [
"buenrostro-bernstein:Donor 1782"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0417TJMX/",
"accession": "IGVFDO0417TJMX",
"aliases": [
"buenrostro-bernstein:Donor 1907"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3633ISAY/",
"accession": "IGVFDO3633ISAY",
"aliases": [
"buenrostro-bernstein:Donor 1915"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8459PAOB/",
"accession": "IGVFDO8459PAOB",
"aliases": [
"buenrostro-bernstein:Donor 1953"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2583SIHN/",
"accession": "IGVFDO2583SIHN",
"aliases": [
"buenrostro-bernstein:Donor 1938"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2967OWUY/",
"accession": "IGVFDO2967OWUY",
"aliases": [
"buenrostro-bernstein:Donor 1989"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1279HYUU/",
"accession": "IGVFDO1279HYUU",
"aliases": [
"buenrostro-bernstein:Donor 1924"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9164SEDG/",
"accession": "IGVFDO9164SEDG",
"aliases": [
"buenrostro-bernstein:Donor 1911"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4283QEWA/",
"accession": "IGVFDO4283QEWA",
"aliases": [
"buenrostro-bernstein:Donor 1974"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2893BVNI/",
"accession": "IGVFDO2893BVNI",
"aliases": [
"buenrostro-bernstein:Donor 1942"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2605TXDO/",
"accession": "IGVFDO2605TXDO",
"aliases": [
"buenrostro-bernstein:Donor 1787"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9956LYMG/",
"accession": "IGVFDO9956LYMG",
"aliases": [
"buenrostro-bernstein:Donor 1794"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0211CZWE/",
"accession": "IGVFDO0211CZWE",
"aliases": [
"buenrostro-bernstein:Donor 1909"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5150ROJL/",
"accession": "IGVFDO5150ROJL",
"aliases": [
"buenrostro-bernstein:Donor 1900"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6064BKKJ/",
"accession": "IGVFDO6064BKKJ",
"aliases": [
"buenrostro-bernstein:Donor 1980"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2217VSIY/",
"accession": "IGVFDO2217VSIY",
"aliases": [
"buenrostro-bernstein:Donor 1955"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3385RWXZ/",
"accession": "IGVFDO3385RWXZ",
"aliases": [
"buenrostro-bernstein:Donor 1780"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8124AYVF/",
"accession": "IGVFDO8124AYVF",
"aliases": [
"buenrostro-bernstein:Donor 1740"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4974JBDF/",
"accession": "IGVFDO4974JBDF",
"aliases": [
"buenrostro-bernstein:Donor 1906"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2649JQXX/",
"accession": "IGVFDO2649JQXX",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6075RUJJ/",
"accession": "IGVFDO6075RUJJ",
"aliases": [
"buenrostro-bernstein:Donor 1935"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5669IKNL/",
"accession": "IGVFDO5669IKNL",
"aliases": [
"buenrostro-bernstein:Donor 1950"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4923LWHA/",
"accession": "IGVFDO4923LWHA",
"aliases": [
"buenrostro-bernstein:Donor 1957"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9815AMKV/",
"accession": "IGVFDO9815AMKV",
"aliases": [
"buenrostro-bernstein:Donor 1926"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9907ZZVD/",
"accession": "IGVFDO9907ZZVD",
"aliases": [
"buenrostro-bernstein:Donor 1902"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9770WYQG/",
"accession": "IGVFDO9770WYQG",
"aliases": [
"buenrostro-bernstein:Donor 1966"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
"accession": "IGVFDO8776OLQD",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4041WUVL/",
"accession": "IGVFDO4041WUVL",
"aliases": [
"buenrostro-bernstein:Donor 1921"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2166LUJJ/",
"accession": "IGVFDO2166LUJJ",
"aliases": [
"buenrostro-bernstein:Donor 1934"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7018SAYO/",
"accession": "IGVFDO7018SAYO",
"aliases": [
"buenrostro-bernstein:Donor 1903"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5859XGBW/",
"accession": "IGVFDO5859XGBW",
"aliases": [
"buenrostro-bernstein:Donor 1971"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9835EEAJ/",
"accession": "IGVFDO9835EEAJ",
"aliases": [
"buenrostro-bernstein:Donor 1951"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4449DKJZ/",
"accession": "IGVFDO4449DKJZ",
"aliases": [
"buenrostro-bernstein:Donor 1919"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5473XXFQ/",
"accession": "IGVFDO5473XXFQ",
"aliases": [
"buenrostro-bernstein:Donor 1927"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6296JPHU/",
"accession": "IGVFDO6296JPHU",
"aliases": [
"buenrostro-bernstein:Donor 1918"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5934RGQS/",
"accession": "IGVFDO5934RGQS",
"aliases": [
"buenrostro-bernstein:Donor 1956"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5046RYOV/",
"accession": "IGVFDO5046RYOV",
"aliases": [
"buenrostro-bernstein:Donor 1949"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9079MLOT/",
"accession": "IGVFDO9079MLOT",
"aliases": [
"buenrostro-bernstein:Donor 1933"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1363RREJ/",
"accession": "IGVFDO1363RREJ",
"aliases": [
"buenrostro-bernstein:Donor 1939"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7384GLJG/",
"accession": "IGVFDO7384GLJG",
"aliases": [
"buenrostro-bernstein:Donor 1985"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0508COBR/",
"accession": "IGVFDO0508COBR",
"aliases": [
"buenrostro-bernstein:Donor 1963"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8886WODZ/",
"accession": "IGVFDO8886WODZ",
"aliases": [
"buenrostro-bernstein:Donor 1922"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3560WDAC/",
"accession": "IGVFDO3560WDAC",
"aliases": [
"buenrostro-bernstein:Donor 1940"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0279GJBF/",
"accession": "IGVFDO0279GJBF",
"aliases": [
"buenrostro-bernstein:Donor 1937"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4747GRSS/",
"accession": "IGVFDO4747GRSS",
"aliases": [
"buenrostro-bernstein:Donor 1910"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9115TZAP/",
"accession": "IGVFDO9115TZAP",
"aliases": [
"buenrostro-bernstein:Donor 1766"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6331OQFD/",
"accession": "IGVFDO6331OQFD",
"aliases": [
"buenrostro-bernstein:Donor 1920"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5249VKYA/",
"accession": "IGVFDO5249VKYA",
"aliases": [
"buenrostro-bernstein:Donor 1954"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2476MGFK/",
"accession": "IGVFDO2476MGFK",
"aliases": [
"buenrostro-bernstein:Donor 1901"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1417AZJE/",
"accession": "IGVFDO1417AZJE",
"aliases": [
"buenrostro-bernstein:Donor 1986"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
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"@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
"certificate_identifier": "IP113-13",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
"certificate_identifier": "IP113-17",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
"certificate_identifier": "IP113-16",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
"certificate_identifier": "IP113-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
"certificate_identifier": "IP113-19",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
"certificate_identifier": "IP113-20",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
"status": "released",
"summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 200)",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:10:58.553049+00:00",
"submitter_comment": "Does not have corresponding scRNA seq MeasurementSet due to failed QC",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "e5d50d7e-3bc0-4e8a-93a7-aba11014e3cd"
}