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MeasurementSet
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IGVFDS1932PIPJ
IGVFDS1932PIPJ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP029_G3_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0199HBWE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19UBCA4LE
7
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0602RIYR
fastq
reads
I2
1
Illumina NovaSeq X
19UBCA4LE
8
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1705XBOA
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19UBCA4LE
8
15 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4364IQGA
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19UBCA4LE
7
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6055QMBM
fastq
reads
I2
1
Illumina NovaSeq X
19UBCA4LE
7
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7386ZODQ
fastq
reads
I1
1
Illumina NovaSeq X
19UBCA4LE
8
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8667DBAD
fastq
reads
I1
1
Illumina NovaSeq X
19UBCA4LE
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8849DZNJ
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19UBCA4LE
8
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM0019MOAR
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO5214IKNF
igvf:corces_donor_BANN1070
male
Homo sapiens
IGVFDO6335EDSP
igvf:corces_donor_BANN1329
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7754VJKM
igvf:corces_donor_BANN0341
male
Homo sapiens
IGVFDO8800RKVB
igvf:corces_donor_BANN1872
female
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
IGVFDO9236YUAT
igvf:corces_donor_BANN0227
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1915WBYK
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP029_G3_ATAC
Ryan Corces, Gladstone Institute UCSF