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MeasurementSet
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IGVFDS1915XQPY
IGVFDS1915XQPY
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP002_G2_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0152BEAW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
6
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0417SKYC
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
8
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0694BKPJ
fastq
reads
I1
1
Illumina NovaSeq X
223JL2LT3
6
438 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1174DPEW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JL2LT3
5
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3078BSWV
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
5
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3519HSGN
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
5
997 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3533THLZ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
7
966 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4276ZFEQ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
6
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4352KIOJ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223JL2LT3
8
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4463VJNS
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223JL2LT3
6
996 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM2903AXLJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO1997RFPJ
igvf:corces_donor_BANN1340
male
Homo sapiens
IGVFDO4108VCBA
igvf:corces_donor_BANN0325
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4438WASY
igvf:corces_donor_BANN1644
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
IGVFDO8451NMBP
igvf:corces_donor_BANN1756
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7046AXFV
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP002_G2_RNA
Ryan Corces, Gladstone Institute UCSF