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IGVFDS1915WBYK

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples
Protocols
Aliases
igvf:corces_measurementSet_RP029_G3_ATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
1
Read 1
22F3GTLT3
4
2.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
22F3GTLT3
5
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
22F3GTLT3
4
541 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
22F3GTLT3
6
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
22F3GTLT3
4
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
22F3GTLT3
3
544 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
22F3GTLT3
5
546 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
22F3GTLT3
3
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
22F3GTLT3
6
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
22F3GTLT3
5
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples

Donors

8 items
Aliases
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN1329
male
Homo sapiens
  • igvf:corces_donor_BANN0124
male
Homo sapiens
  • igvf:corces_donor_BANN1234
male
Homo sapiens
  • igvf:corces_donor_BANN0341
male
Homo sapiens
  • igvf:corces_donor_BANN1872
female
Homo sapiens
  • igvf:corces_donor_BANN1352
female
Homo sapiens
  • igvf:corces_donor_BANN0227
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_RP029_G3_RNA
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF