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MeasurementSet
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IGVFDS1909GMRJ
IGVFDS1909GMRJ
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP005_G1_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0455VJHX
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
8
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0865ZJOJ
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
5
299 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1382JHUB
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
7
314 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1441BBTM
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
7
282 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1910PQSH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
8
968 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2052VRMV
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
5
2.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2341CJNK
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
5
334 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2723YERF
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
7
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3191PPSD
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
8
296 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4641NFDH
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
6
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM7341RHCE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO0802OVOD
igvf:corces_donor_BANN1030
male
Homo sapiens
IGVFDO0877AIRF
igvf:corces_donor_BANN0417
male
Homo sapiens
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1627RQLG
igvf:corces_donor_BANN1170
male
Homo sapiens
IGVFDO4015EJFT
igvf:corces_donor_BANN0526
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO7815RLQM
igvf:corces_donor_BANN1504
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS8592RZOJ
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP005_G1_ATAC
Ryan Corces, Gladstone Institute UCSF