IGVFDS1902SDBK

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 167)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 370

Submitter Comment

Does not have corresponding scRNA seq MeasurementSet due to failed QC

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

30 items

Read Names

IGVFFI0311QJTW

fastq

reads

822

Barcode index

IGVFFI7848VVGW

Illumina NovaSeq X

22773CLT3

743 MB

Jason Buenrostro, Broad

validated

IGVFFI0311XSCQ

fastq

reads

8434

Barcode index

IGVFFI3214PYRV

Illumina NovaSeq X

22LMVNLT4

236 MB

Jason Buenrostro, Broad

validated

IGVFFI0934FRHJ

fastq

reads

822

IGVFFI7848VVGW

Illumina NovaSeq X

22773CLT3

841 MB

Jason Buenrostro, Broad

validated

IGVFFI1251DBQY

fastq

reads

8722

IGVFFI0983ETGZ

Illumina NovaSeq X

22LMVNLT4

377 MB

Jason Buenrostro, Broad

validated

IGVFFI1255VMKF

fastq

reads

8818

IGVFFI7594KANU

Illumina NovaSeq X

22LMVNLT4

394 MB

Jason Buenrostro, Broad

validated

IGVFFI1405IQVV

fastq

reads

804

IGVFFI6681WLWY

Illumina NovaSeq X

22773CLT3

835 MB

Jason Buenrostro, Broad

validated

IGVFFI1406LSKN

fastq

reads

9010

Barcode index

IGVFFI8366PZFX

Illumina NovaSeq X

22LMVNLT4

225 MB

Jason Buenrostro, Broad

validated

IGVFFI1450VPBW

fastq

reads

8626

IGVFFI2184MANI

Illumina NovaSeq X

22LMVNLT4

394 MB

Jason Buenrostro, Broad

validated

IGVFFI1669NRJD

fastq

reads

8818

IGVFFI7594KANU

Illumina NovaSeq X

22LMVNLT4

379 MB

Jason Buenrostro, Broad

validated

IGVFFI1703ODWJ

fastq

reads

8530

IGVFFI4107YHOA

Illumina NovaSeq X

22LMVNLT4

376 MB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM7204UPWG

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 4 days (cellular sub pool: SS-PKR 167)