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INDEXED
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MeasurementSet
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IGVFDS1887NZWO
IGVFDS1887NZWO
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP025_G5_RNA
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2465ZXCH
fastq
reads
I2
1
Illumina NovaSeq X
19RTCA4LE
4
990 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3740FXPB
fastq
reads
I1
1
Illumina NovaSeq X
19RTCA4LE
4
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4648CMOI
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19RTCA4LE
5
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6213FYWA
fastq
reads
I1
1
Illumina NovaSeq X
19RTCA4LE
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7492QBLR
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19RTCA4LE
5
9.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9015HPLR
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
19RTCA4LE
4
9.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9190DZRH
fastq
reads
I2
1
Illumina NovaSeq X
19RTCA4LE
5
995 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI9529NLRX
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19RTCA4LE
4
13 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM4968PVUL
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples
Donors
10 items
Accession
Aliases
Sex
Taxa
IGVFDO0112XZXT
igvf:corces_donor_BANN0218
male
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6316TGCK
igvf:corces_donor_BANN1814
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO7051PRHR
igvf:corces_donor_BANN1234
male
Homo sapiens
IGVFDO7649CIGW
igvf:corces_donor_BANN9902
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0986EJTQ
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP025_G5_ATAC
Ryan Corces, Gladstone Institute UCSF
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF